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PRRT4 (proline rich transmembrane protein 4)

Identity

Alias_namesproline-rich transmembrane protein 4
Other alias-
HGNC (Hugo) PRRT4
LocusID (NCBI) 401399
Atlas_Id 72300
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 128350325 and ends at 128361685 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRRT4   37280
Cards
Entrez_Gene (NCBI)PRRT4  401399  proline rich transmembrane protein 4
Aliases
GeneCards (Weizmann)PRRT4
Ensembl hg19 (Hinxton)ENSG00000224940 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224940 [Gene_View]  chr7:128350325-128361685 [Contig_View]  PRRT4 [Vega]
ICGC DataPortalENSG00000224940
TCGA cBioPortalPRRT4
AceView (NCBI)PRRT4
Genatlas (Paris)PRRT4
WikiGenes401399
SOURCE (Princeton)PRRT4
Genetics Home Reference (NIH)PRRT4
Genomic and cartography
GoldenPath hg38 (UCSC)PRRT4  -     chr7:128350325-128361685 -  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRRT4  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblPRRT4 - 7q32.1 [CytoView hg19]  PRRT4 - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBIPRRT4 [Mapview hg19]  PRRT4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC063892 BU688038 BX327107 BX355277
RefSeq transcript (Entrez)NM_001114726 NM_001174164
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRRT4
Cluster EST : UnigeneHs.381096 [ NCBI ]
CGAP (NCI)Hs.381096
Alternative Splicing GalleryENSG00000224940
Gene ExpressionPRRT4 [ NCBI-GEO ]   PRRT4 [ EBI - ARRAY_EXPRESS ]   PRRT4 [ SEEK ]   PRRT4 [ MEM ]
Gene Expression Viewer (FireBrowse)PRRT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401399
GTEX Portal (Tissue expression)PRRT4
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JH25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JH25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JH25
Splice isoforms : SwissVarC9JH25
PhosPhoSitePlusC9JH25
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRRT4
DMDM Disease mutations401399
Blocks (Seattle)PRRT4
SuperfamilyC9JH25
Human Protein AtlasENSG00000224940
Peptide AtlasC9JH25
IPIIPI00749338   IPI00946320   IPI00939936   IPI00945780   IPI00945530   
Protein Interaction databases
DIP (DOE-UCLA)C9JH25
IntAct (EBI)C9JH25
FunCoupENSG00000224940
BioGRIDPRRT4
STRING (EMBL)PRRT4
ZODIACPRRT4
Ontologies - Pathways
QuickGOC9JH25
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkPRRT4
Atlas of Cancer Signalling NetworkPRRT4
Wikipedia pathwaysPRRT4
Orthology - Evolution
OrthoDB401399
GeneTree (enSembl)ENSG00000224940
Phylogenetic Trees/Animal Genes : TreeFamPRRT4
HOVERGENC9JH25
HOGENOMC9JH25
Homologs : HomoloGenePRRT4
Homology/Alignments : Family Browser (UCSC)PRRT4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRRT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRRT4
dbVarPRRT4
ClinVarPRRT4
1000_GenomesPRRT4 
Exome Variant ServerPRRT4
ExAC (Exome Aggregation Consortium)PRRT4 (select the gene name)
Genetic variants : HAPMAP401399
Genomic Variants (DGV)PRRT4 [DGVbeta]
DECIPHERPRRT4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRRT4 
Mutations
ICGC Data PortalPRRT4 
TCGA Data PortalPRRT4 
Broad Tumor PortalPRRT4
OASIS PortalPRRT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRRT4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRRT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRRT4
DgiDB (Drug Gene Interaction Database)PRRT4
DoCM (Curated mutations)PRRT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRRT4 (select a term)
intoGenPRRT4
Cancer3DPRRT4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRRT4
Genetic Testing Registry PRRT4
NextProtC9JH25 [Medical]
TSGene401399
GENETestsPRRT4
Target ValidationPRRT4
Huge Navigator PRRT4 [HugePedia]
snp3D : Map Gene to Disease401399
BioCentury BCIQPRRT4
ClinGenPRRT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401399
Chemical/Pharm GKB GenePA165618245
Clinical trialPRRT4
Miscellaneous
canSAR (ICR)PRRT4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRRT4
EVEXPRRT4
GoPubMedPRRT4
iHOPPRRT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:35:28 CEST 2017

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