PRRX1 (paired related homeobox 1)

Identity

Other names	PHOX1
	PMX1
	PRX1
HGNC	PRRX1
Location	1q24.3
Location_base_pair	Starts at 168899937 and ends at 168975165 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	PRRX1   9142
Entrez_Gene	PRRX1  5396  paired related homeobox 1
	Cards
GeneCards	PRRX1
Ensembl	PRRX1 [Search_View]   ENSG00000116132 [Gene_View]
Genatlas	PRRX1
GeneLynx	PRRX1
eGenome	PRRX1
euGene	5396
	Genomic and cartography
GoldenPath	PRRX1  -  1q24.3   chr1:168899937-168975165 +  1q24.2   [Description]    (hg18-March_2006)
Ensembl	PRRX1 - 1q24.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	PRRX1
	Gene and transcription
Genbank	AA452918 [ ENTREZ ]
Genbank	AA758879 [ ENTREZ ]
Genbank	AK225968 [ ENTREZ ]
Genbank	AV750422 [ ENTREZ ]
Genbank	BC074993 [ ENTREZ ]
RefSeq	NM_006902 [ SRS ]    NM_006902 [ ENTREZ ]
RefSeq	NM_022716 [ SRS ]    NM_022716 [ ENTREZ ]
RefSeq	AC_000044 [ SRS ]    AC_000044 [ ENTREZ ]
RefSeq	AC_000133 [ SRS ]    AC_000133 [ ENTREZ ]
RefSeq	NC_000001 [ SRS ]    NC_000001 [ ENTREZ ]
RefSeq	NT_004487 [ SRS ]    NT_004487 [ ENTREZ ]
RefSeq	NW_001838533 [ SRS ]    NW_001838533 [ ENTREZ ]
RefSeq	NW_926128 [ SRS ]    NW_926128 [ ENTREZ ]
AceView	PRRX1 AceView - NCBI
Unigene	Hs.702224 [ SRS ]    Hs.702224 [ NCBI ]     HS702224 [ spliceNest ]
Fast-db	17561 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P54821 [ SRS]    P54821 [ EXPASY ]     P54821 [ INTERPRO ]     P54821 [ UNIPROT ]
Prosite	PS00027 HOMEOBOX_1 [ SRS ]    PS00027 HOMEOBOX_1 [ Expasy ]
Prosite	PS50071 HOMEOBOX_2 [ SRS ]    PS50071 HOMEOBOX_2 [ Expasy ]
Prosite	PS50803 OAR [ SRS ]    PS50803 OAR [ Expasy ]
Interpro	IPR003654 Homeo_OAR [ SRS ]    IPR003654 Homeo_OAR [ EBI ]
Interpro	IPR001356 Homeobox [ SRS ]    IPR001356 Homeobox [ EBI ]
Interpro	IPR012287 Homeodomain-rel [ SRS ]    IPR012287 Homeodomain-rel [ EBI ]
CluSTr	P54821
Pfam	PF00046 Homeobox [ SRS ]    PF00046 Homeobox [ Sanger ]    pfam00046 [ NCBI-CDD ]
Pfam	PF03826 OAR [ SRS ]    PF03826 OAR [ Sanger ]    pfam03826 [ NCBI-CDD ]
Smart	SM00389 HOX [EMBL]
Prodom	PD000010 Homeobox[INRA-Toulouse]
Prodom	P54821 PRRX1_HUMAN [ Domain structure ]   P54821 PRRX1_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P54821
HPRD	01337
	Protein Interaction databases
DIP	P54821
IntAct	P54821
	Polymorphism : SNP, mutations, diseases
OMIM	167420    [ map ]
GENECLINICS	167420
SNP	PRRX1 [dbSNP-NCBI]
SNP	NM_006902 [SNP-NCI]
SNP	NM_022716 [SNP-NCI]
SNP	PRRX1 [GeneSNPs - Utah]  PRRX1] [HGBASE - SRS]
HAPMAP	PRRX1 [HAPMAP]
COSMIC	PRRX1 [Somatic mutation (COSMIC-CGP-Sanger)]
TICdb	transcription [Translocation breakpoints In Cancer]
HGMD	PRRX1
	General knowledge
Family Browser	PRRX1 [UCSC Family Browser]
SOURCE	NM_006902
SOURCE	NM_022716
SMD	Hs.702224
SAGE	Hs.702224
GO	transcription factor activity [Amigo]  transcription factor activity
GO	transcription coactivator activity [Amigo]  transcription coactivator activity
GO	nucleus [Amigo]  nucleus
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	multicellular organismal development [Amigo]  multicellular organismal development
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
PubGene	PRRX1
TreeFam	PRRX1
CTD	5396 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	PRRX1 Related clones (RZPD - Berlin)
	PubMed
PubMed	17 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:27:44 2008