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PRSS29P (protease, serine 29, pseudogene)

Identity

Alias_symbol (synonym)Isp2
Other aliasISP2
HGNC (Hugo) PRSS29P
LocusID (NCBI) 123787
Atlas_Id 76608
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1260952 and ends at 1265270 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PRSS29P   17542
Cards
Entrez_Gene (NCBI)PRSS29P  123787  protease, serine 29, pseudogene
AliasesISP2
GeneCards (Weizmann)PRSS29P
Ensembl hg19 (Hinxton)ENSG00000196364 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196364 [Gene_View]  chr16:1260952-1265270 [Contig_View]  PRSS29P [Vega]
ICGC DataPortalENSG00000196364
TCGA cBioPortalPRSS29P
AceView (NCBI)PRSS29P
Genatlas (Paris)PRSS29P
WikiGenes123787
SOURCE (Princeton)PRSS29P
Genetics Home Reference (NIH)PRSS29P
Genomic and cartography
GoldenPath hg38 (UCSC)PRSS29P  -     chr16:1260952-1265270 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRSS29P  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblPRSS29P - 16p13.3 [CytoView hg19]  PRSS29P - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIPRSS29P [Mapview hg19]  PRSS29P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126098
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRSS29P
Cluster EST : UnigeneHs.738703 [ NCBI ]
CGAP (NCI)Hs.738703
Alternative Splicing GalleryENSG00000196364
Gene ExpressionPRSS29P [ NCBI-GEO ]   PRSS29P [ EBI - ARRAY_EXPRESS ]   PRSS29P [ SEEK ]   PRSS29P [ MEM ]
Gene Expression Viewer (FireBrowse)PRSS29P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123787
GTEX Portal (Tissue expression)PRSS29P
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NIE9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NIE9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NIE9
Splice isoforms : SwissVarA6NIE9
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   
PhosPhoSitePlusA6NIE9
Domaine pattern : Prosite (Expaxy)TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)Peptidase_S1_PA    Peptidase_S1A    Trypsin_dom    TRYPSIN_HIS    TRYPSIN_SER   
Domain families : Pfam (Sanger)Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00089   
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
Conserved Domain (NCBI)PRSS29P
DMDM Disease mutations123787
Blocks (Seattle)PRSS29P
SuperfamilyA6NIE9
Human Protein AtlasENSG00000196364
Peptide AtlasA6NIE9
IPIIPI00402189   
Protein Interaction databases
DIP (DOE-UCLA)A6NIE9
IntAct (EBI)A6NIE9
FunCoupENSG00000196364
BioGRIDPRSS29P
STRING (EMBL)PRSS29P
ZODIACPRSS29P
Ontologies - Pathways
QuickGOA6NIE9
Ontology : AmiGOserine-type endopeptidase activity  extracellular region  proteolysis  
Ontology : EGO-EBIserine-type endopeptidase activity  extracellular region  proteolysis  
NDEx NetworkPRSS29P
Atlas of Cancer Signalling NetworkPRSS29P
Wikipedia pathwaysPRSS29P
Orthology - Evolution
OrthoDB123787
GeneTree (enSembl)ENSG00000196364
Phylogenetic Trees/Animal Genes : TreeFamPRSS29P
HOVERGENA6NIE9
HOGENOMA6NIE9
Homologs : HomoloGenePRSS29P
Homology/Alignments : Family Browser (UCSC)PRSS29P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRSS29P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRSS29P
dbVarPRSS29P
ClinVarPRSS29P
1000_GenomesPRSS29P 
Exome Variant ServerPRSS29P
ExAC (Exome Aggregation Consortium)PRSS29P (select the gene name)
Genetic variants : HAPMAP123787
Genomic Variants (DGV)PRSS29P [DGVbeta]
DECIPHERPRSS29P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRSS29P 
Mutations
ICGC Data PortalPRSS29P 
TCGA Data PortalPRSS29P 
Broad Tumor PortalPRSS29P
OASIS PortalPRSS29P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRSS29P
BioMutasearch PRSS29P
DgiDB (Drug Gene Interaction Database)PRSS29P
DoCM (Curated mutations)PRSS29P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRSS29P (select a term)
intoGenPRSS29P
Cancer3DPRSS29P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRSS29P
Genetic Testing Registry PRSS29P
NextProtA6NIE9 [Medical]
TSGene123787
GENETestsPRSS29P
Target ValidationPRSS29P
Huge Navigator PRSS29P [HugePedia]
snp3D : Map Gene to Disease123787
BioCentury BCIQPRSS29P
ClinGenPRSS29P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123787
Chemical/Pharm GKB GenePA134869388
Clinical trialPRSS29P
Miscellaneous
canSAR (ICR)PRSS29P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRSS29P
EVEXPRSS29P
GoPubMedPRSS29P
iHOPPRSS29P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:28 CEST 2017

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