Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRSS35 (protease, serine 35)

Identity

Alias_namesC6orf158
chromosome 6 open reading frame 158
Alias_symbol (synonym)MGC46520
dJ223E3.1
Other alias
HGNC (Hugo) PRSS35
LocusID (NCBI) 167681
Atlas_Id 72307
Location 6q14.2  [Link to chromosome band 6q14]
Location_base_pair Starts at 83512475 and ends at 83525702 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRSS35   21387
Cards
Entrez_Gene (NCBI)PRSS35  167681  protease, serine 35
AliasesC6orf158; dJ223E3.1
GeneCards (Weizmann)PRSS35
Ensembl hg19 (Hinxton)ENSG00000146250 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146250 [Gene_View]  ENSG00000146250 [Sequence]  chr6:83512475-83525702 [Contig_View]  PRSS35 [Vega]
ICGC DataPortalENSG00000146250
TCGA cBioPortalPRSS35
AceView (NCBI)PRSS35
Genatlas (Paris)PRSS35
WikiGenes167681
SOURCE (Princeton)PRSS35
Genetics Home Reference (NIH)PRSS35
Genomic and cartography
GoldenPath hg38 (UCSC)PRSS35  -     chr6:83512475-83525702 +  6q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRSS35  -     6q14.2   [Description]    (hg19-Feb_2009)
EnsemblPRSS35 - 6q14.2 [CytoView hg19]  PRSS35 - 6q14.2 [CytoView hg38]
Mapping of homologs : NCBIPRSS35 [Mapview hg19]  PRSS35 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK291928 AY358661 BC037170 DA251169 JF432418
RefSeq transcript (Entrez)NM_001170423 NM_153362
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRSS35
Cluster EST : UnigeneHs.98381 [ NCBI ]
CGAP (NCI)Hs.98381
Alternative Splicing GalleryENSG00000146250
Gene ExpressionPRSS35 [ NCBI-GEO ]   PRSS35 [ EBI - ARRAY_EXPRESS ]   PRSS35 [ SEEK ]   PRSS35 [ MEM ]
Gene Expression Viewer (FireBrowse)PRSS35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)167681
GTEX Portal (Tissue expression)PRSS35
Human Protein AtlasENSG00000146250-PRSS35 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N3Z0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N3Z0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N3Z0
Splice isoforms : SwissVarQ8N3Z0
PhosPhoSitePlusQ8N3Z0
Domaine pattern : Prosite (Expaxy)TRYPSIN_HIS (PS00134)   
Domains : Interpro (EBI)Peptidase_S1_PA    Trypsin_dom    TRYPSIN_HIS   
Domain families : Pfam (Sanger)Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00089   
Conserved Domain (NCBI)PRSS35
DMDM Disease mutations167681
Blocks (Seattle)PRSS35
SuperfamilyQ8N3Z0
Human Protein Atlas [tissue]ENSG00000146250-PRSS35 [tissue]
Peptide AtlasQ8N3Z0
HPRD07095
IPIIPI00451450   
Protein Interaction databases
DIP (DOE-UCLA)Q8N3Z0
IntAct (EBI)Q8N3Z0
FunCoupENSG00000146250
BioGRIDPRSS35
STRING (EMBL)PRSS35
ZODIACPRSS35
Ontologies - Pathways
QuickGOQ8N3Z0
Ontology : AmiGOextracellular region  mitochondrion  
Ontology : EGO-EBIextracellular region  mitochondrion  
NDEx NetworkPRSS35
Atlas of Cancer Signalling NetworkPRSS35
Wikipedia pathwaysPRSS35
Orthology - Evolution
OrthoDB167681
GeneTree (enSembl)ENSG00000146250
Phylogenetic Trees/Animal Genes : TreeFamPRSS35
HOVERGENQ8N3Z0
HOGENOMQ8N3Z0
Homologs : HomoloGenePRSS35
Homology/Alignments : Family Browser (UCSC)PRSS35
Gene fusions - Rearrangements
Fusion : QuiverPRSS35
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRSS35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRSS35
dbVarPRSS35
ClinVarPRSS35
1000_GenomesPRSS35 
Exome Variant ServerPRSS35
ExAC (Exome Aggregation Consortium)ENSG00000146250
GNOMAD BrowserENSG00000146250
Varsome BrowserPRSS35
Genetic variants : HAPMAP167681
Genomic Variants (DGV)PRSS35 [DGVbeta]
DECIPHERPRSS35 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRSS35 
Mutations
ICGC Data PortalPRSS35 
TCGA Data PortalPRSS35 
Broad Tumor PortalPRSS35
OASIS PortalPRSS35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRSS35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRSS35
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch PRSS35
DgiDB (Drug Gene Interaction Database)PRSS35
DoCM (Curated mutations)PRSS35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRSS35 (select a term)
intoGenPRSS35
Cancer3DPRSS35(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRSS35
MedgenPRSS35
Genetic Testing Registry PRSS35
NextProtQ8N3Z0 [Medical]
TSGene167681
GENETestsPRSS35
Target ValidationPRSS35
Huge Navigator PRSS35 [HugePedia]
snp3D : Map Gene to Disease167681
BioCentury BCIQPRSS35
ClinGenPRSS35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD167681
Chemical/Pharm GKB GenePA134974089
Clinical trialPRSS35
Miscellaneous
canSAR (ICR)PRSS35 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRSS35
EVEXPRSS35
GoPubMedPRSS35
iHOPPRSS35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:25:24 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.