Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRSS3P2 (protease, serine 3 pseudogene 2)

Identity

Alias_symbol (synonym)TRY6
Other aliasT6
HGNC (Hugo) PRSS3P2
LocusID (NCBI) 154754
Atlas_Id 47717
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 142478757 and ends at 142482399 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRSS3P2   43788
Cards
Entrez_Gene (NCBI)PRSS3P2  154754  protease, serine 3 pseudogene 2
AliasesT6; TRY6
GeneCards (Weizmann)PRSS3P2
Ensembl hg19 (Hinxton) [Gene_View]  chr7:142478757-142482399 [Contig_View]  PRSS3P2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:142478757-142482399 [Contig_View]  PRSS3P2 [Vega]
TCGA cBioPortalPRSS3P2
AceView (NCBI)PRSS3P2
Genatlas (Paris)PRSS3P2
WikiGenes154754
SOURCE (Princeton)PRSS3P2
Genetics Home Reference (NIH)PRSS3P2
Genomic and cartography
GoldenPath hg19 (UCSC)PRSS3P2  -     chr7:142478757-142482399 +  7q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRSS3P2  -     7q34   [Description]    (hg38-Dec_2013)
EnsemblPRSS3P2 - 7q34 [CytoView hg19]  PRSS3P2 - 7q34 [CytoView hg38]
Mapping of homologs : NCBIPRSS3P2 [Mapview hg19]  PRSS3P2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BE047035
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NG_001333 NT_187562
Consensus coding sequences : CCDS (NCBI)PRSS3P2
Cluster EST : UnigeneHs.728780 [ NCBI ]
CGAP (NCI)Hs.728780
Gene ExpressionPRSS3P2 [ NCBI-GEO ]   PRSS3P2 [ EBI - ARRAY_EXPRESS ]   PRSS3P2 [ SEEK ]   PRSS3P2 [ MEM ]
Gene Expression Viewer (FireBrowse)PRSS3P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)154754
GTEX Portal (Tissue expression)PRSS3P2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHM4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHM4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHM4
Splice isoforms : SwissVarQ8NHM4
Catalytic activity : Enzyme3.4.21.4 [ Enzyme-Expasy ]   3.4.21.43.4.21.4 [ IntEnz-EBI ]   3.4.21.4 [ BRENDA ]   3.4.21.4 [ KEGG ]   
PhosPhoSitePlusQ8NHM4
Domaine pattern : Prosite (Expaxy)TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)Peptidase_S1_PA    Peptidase_S1A    Trypsin_dom    TRYPSIN_HIS    TRYPSIN_SER   
Domain families : Pfam (Sanger)Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00089   
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
Conserved Domain (NCBI)PRSS3P2
DMDM Disease mutations154754
Blocks (Seattle)PRSS3P2
SuperfamilyQ8NHM4
Peptide AtlasQ8NHM4
Protein Interaction databases
DIP (DOE-UCLA)Q8NHM4
IntAct (EBI)Q8NHM4
BioGRIDPRSS3P2
STRING (EMBL)PRSS3P2
ZODIACPRSS3P2
Ontologies - Pathways
QuickGOQ8NHM4
Ontology : AmiGOserine-type endopeptidase activity  extracellular space  proteolysis  digestion  endothelial cell migration  metal ion binding  
Ontology : EGO-EBIserine-type endopeptidase activity  extracellular space  proteolysis  digestion  endothelial cell migration  metal ion binding  
NDEx NetworkPRSS3P2
Atlas of Cancer Signalling NetworkPRSS3P2
Wikipedia pathwaysPRSS3P2
Orthology - Evolution
OrthoDB154754
Phylogenetic Trees/Animal Genes : TreeFamPRSS3P2
HOVERGENQ8NHM4
HOGENOMQ8NHM4
Homologs : HomoloGenePRSS3P2
Homology/Alignments : Family Browser (UCSC)PRSS3P2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRSS3P2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRSS3P2
dbVarPRSS3P2
ClinVarPRSS3P2
1000_GenomesPRSS3P2 
Exome Variant ServerPRSS3P2
ExAC (Exome Aggregation Consortium)PRSS3P2 (select the gene name)
Genetic variants : HAPMAP154754
Genomic Variants (DGV)PRSS3P2 [DGVbeta]
DECIPHER (Syndromes)7:142478757-142482399  
CONAN: Copy Number AnalysisPRSS3P2 
Mutations
ICGC Data PortalPRSS3P2 
TCGA Data PortalPRSS3P2 
Broad Tumor PortalPRSS3P2
OASIS PortalPRSS3P2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRSS3P2
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch PRSS3P2
DgiDB (Drug Gene Interaction Database)PRSS3P2
DoCM (Curated mutations)PRSS3P2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRSS3P2 (select a term)
intoGenPRSS3P2
Cancer3DPRSS3P2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRSS3P2
Genetic Testing Registry PRSS3P2
NextProtQ8NHM4 [Medical]
TSGene154754
GENETestsPRSS3P2
Huge Navigator PRSS3P2 [HugePedia]
snp3D : Map Gene to Disease154754
BioCentury BCIQPRSS3P2
ClinGenPRSS3P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154754
Clinical trialPRSS3P2
Miscellaneous
canSAR (ICR)PRSS3P2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRSS3P2
EVEXPRSS3P2
GoPubMedPRSS3P2
iHOPPRSS3P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:23:12 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.