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PRSS47 (protease, serine 47)

Identity

Other alias-
HGNC (Hugo) PRSS47
LocusID (NCBI) 138652
Atlas_Id 79393
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 92184332 and ends at 92191156 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRSS47   37326
Cards
Entrez_Gene (NCBI)PRSS47  138652  protease, serine 47
Aliases
GeneCards (Weizmann)PRSS47
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:92184332-92191156 [Contig_View]  PRSS47 [Vega]
TCGA cBioPortalPRSS47
AceView (NCBI)PRSS47
Genatlas (Paris)PRSS47
WikiGenes138652
SOURCE (Princeton)PRSS47
Genetics Home Reference (NIH)PRSS47
Genomic and cartography
GoldenPath hg38 (UCSC)PRSS47  -     chr9:92184332-92191156 -  9q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRSS47  -     9q22.31   [Description]    (hg19-Feb_2009)
EnsemblPRSS47 - 9q22.31 [CytoView hg19]  PRSS47 - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBIPRSS47 [Mapview hg19]  PRSS47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)HY036024 HY221149
RefSeq transcript (Entrez)NM_001350291
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRSS47
Cluster EST : UnigeneHs.742918 [ NCBI ]
CGAP (NCI)Hs.742918
Gene ExpressionPRSS47 [ NCBI-GEO ]   PRSS47 [ EBI - ARRAY_EXPRESS ]   PRSS47 [ SEEK ]   PRSS47 [ MEM ]
Gene Expression Viewer (FireBrowse)PRSS47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138652
GTEX Portal (Tissue expression)PRSS47
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MTI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MTI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MTI9
Splice isoforms : SwissVarA8MTI9
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   
PhosPhoSitePlusA8MTI9
Domaine pattern : Prosite (Expaxy)TRYPSIN_DOM (PS50240)   
Domains : Interpro (EBI)Peptidase_S1_PA    Peptidase_S1A    Rab-GTPase-TBC_dom    Trypsin_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)    Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00566    pfam00089   
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
Conserved Domain (NCBI)PRSS47
DMDM Disease mutations138652
Blocks (Seattle)PRSS47
SuperfamilyA8MTI9
Peptide AtlasA8MTI9
IPIIPI00887433   
Protein Interaction databases
DIP (DOE-UCLA)A8MTI9
IntAct (EBI)A8MTI9
BioGRIDPRSS47
STRING (EMBL)PRSS47
ZODIACPRSS47
Ontologies - Pathways
QuickGOA8MTI9
Ontology : AmiGOserine-type endopeptidase activity  extracellular region  proteolysis  
Ontology : EGO-EBIserine-type endopeptidase activity  extracellular region  proteolysis  
NDEx NetworkPRSS47
Atlas of Cancer Signalling NetworkPRSS47
Wikipedia pathwaysPRSS47
Orthology - Evolution
OrthoDB138652
Phylogenetic Trees/Animal Genes : TreeFamPRSS47
HOVERGENA8MTI9
HOGENOMA8MTI9
Homologs : HomoloGenePRSS47
Homology/Alignments : Family Browser (UCSC)PRSS47
Gene fusions - Rearrangements
Tumor Fusion PortalPRSS47
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRSS47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRSS47
dbVarPRSS47
ClinVarPRSS47
1000_GenomesPRSS47 
Exome Variant ServerPRSS47
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP138652
Genomic Variants (DGV)PRSS47 [DGVbeta]
DECIPHERPRSS47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRSS47 
Mutations
ICGC Data PortalPRSS47 
TCGA Data PortalPRSS47 
Broad Tumor PortalPRSS47
OASIS PortalPRSS47 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRSS47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRSS47
DgiDB (Drug Gene Interaction Database)PRSS47
DoCM (Curated mutations)PRSS47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRSS47 (select a term)
intoGenPRSS47
Cancer3DPRSS47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRSS47
MedgenPRSS47
Genetic Testing Registry PRSS47
NextProtA8MTI9 [Medical]
TSGene138652
GENETestsPRSS47
Target ValidationPRSS47
Huge Navigator PRSS47 [HugePedia]
snp3D : Map Gene to Disease138652
BioCentury BCIQPRSS47
ClinGenPRSS47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138652
Clinical trialPRSS47
Miscellaneous
canSAR (ICR)PRSS47 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRSS47
EVEXPRSS47
GoPubMedPRSS47
iHOPPRSS47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:20:32 CET 2017

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