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PRSS54 (protease, serine 54)

Identity

Alias_symbol (synonym)FLJ25339
KLKBL4
CT67
Other alias
HGNC (Hugo) PRSS54
LocusID (NCBI) 221191
Atlas_Id 72317
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 58279997 and ends at 58295047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF292 (6q14.3) / PRSS54 (16q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRSS54   26336
Cards
Entrez_Gene (NCBI)PRSS54  221191  protease, serine 54
AliasesCT67; KLKBL4
GeneCards (Weizmann)PRSS54
Ensembl hg19 (Hinxton)ENSG00000103023 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103023 [Gene_View]  chr16:58279997-58295047 [Contig_View]  PRSS54 [Vega]
ICGC DataPortalENSG00000103023
TCGA cBioPortalPRSS54
AceView (NCBI)PRSS54
Genatlas (Paris)PRSS54
WikiGenes221191
SOURCE (Princeton)PRSS54
Genetics Home Reference (NIH)PRSS54
Genomic and cartography
GoldenPath hg38 (UCSC)PRSS54  -     chr16:58279997-58295047 -  16q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRSS54  -     16q21   [Description]    (hg19-Feb_2009)
EnsemblPRSS54 - 16q21 [CytoView hg19]  PRSS54 - 16q21 [CytoView hg38]
Mapping of homologs : NCBIPRSS54 [Mapview hg19]  PRSS54 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058068 AK302175 AL137484 BC057843 HM005663
RefSeq transcript (Entrez)NM_001080492 NM_001305173 NM_001305174
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRSS54
Cluster EST : UnigeneHs.411239 [ NCBI ]
CGAP (NCI)Hs.411239
Alternative Splicing GalleryENSG00000103023
Gene ExpressionPRSS54 [ NCBI-GEO ]   PRSS54 [ EBI - ARRAY_EXPRESS ]   PRSS54 [ SEEK ]   PRSS54 [ MEM ]
Gene Expression Viewer (FireBrowse)PRSS54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221191
GTEX Portal (Tissue expression)PRSS54
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PEW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PEW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PEW0
Splice isoforms : SwissVarQ6PEW0
PhosPhoSitePlusQ6PEW0
Domaine pattern : Prosite (Expaxy)TRYPSIN_DOM (PS50240)   
Domains : Interpro (EBI)Peptidase_S1_PA    Trypsin_dom   
Domain families : Pfam (Sanger)Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00089   
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
Conserved Domain (NCBI)PRSS54
DMDM Disease mutations221191
Blocks (Seattle)PRSS54
SuperfamilyQ6PEW0
Human Protein AtlasENSG00000103023
Peptide AtlasQ6PEW0
IPIIPI00307320   IPI01012938   
Protein Interaction databases
DIP (DOE-UCLA)Q6PEW0
IntAct (EBI)Q6PEW0
FunCoupENSG00000103023
BioGRIDPRSS54
STRING (EMBL)PRSS54
ZODIACPRSS54
Ontologies - Pathways
QuickGOQ6PEW0
Ontology : AmiGOserine-type endopeptidase activity  extracellular region  proteolysis  
Ontology : EGO-EBIserine-type endopeptidase activity  extracellular region  proteolysis  
NDEx NetworkPRSS54
Atlas of Cancer Signalling NetworkPRSS54
Wikipedia pathwaysPRSS54
Orthology - Evolution
OrthoDB221191
GeneTree (enSembl)ENSG00000103023
Phylogenetic Trees/Animal Genes : TreeFamPRSS54
HOVERGENQ6PEW0
HOGENOMQ6PEW0
Homologs : HomoloGenePRSS54
Homology/Alignments : Family Browser (UCSC)PRSS54
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRSS54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRSS54
dbVarPRSS54
ClinVarPRSS54
1000_GenomesPRSS54 
Exome Variant ServerPRSS54
ExAC (Exome Aggregation Consortium)PRSS54 (select the gene name)
Genetic variants : HAPMAP221191
Genomic Variants (DGV)PRSS54 [DGVbeta]
DECIPHERPRSS54 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRSS54 
Mutations
ICGC Data PortalPRSS54 
TCGA Data PortalPRSS54 
Broad Tumor PortalPRSS54
OASIS PortalPRSS54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRSS54  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRSS54
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRSS54
DgiDB (Drug Gene Interaction Database)PRSS54
DoCM (Curated mutations)PRSS54 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRSS54 (select a term)
intoGenPRSS54
Cancer3DPRSS54(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPRSS54
Genetic Testing Registry PRSS54
NextProtQ6PEW0 [Medical]
TSGene221191
GENETestsPRSS54
Huge Navigator PRSS54 [HugePedia]
snp3D : Map Gene to Disease221191
BioCentury BCIQPRSS54
ClinGenPRSS54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221191
Chemical/Pharm GKB GenePA165450675
Clinical trialPRSS54
Miscellaneous
canSAR (ICR)PRSS54 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRSS54
EVEXPRSS54
GoPubMedPRSS54
iHOPPRSS54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:49:59 CEST 2017

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