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PRSS55 (protease, serine 55)

Identity

Alias_symbol (synonym)T-SP1
UNQ9391
CT153
Other aliasTSP1
HGNC (Hugo) PRSS55
LocusID (NCBI) 203074
Atlas_Id 51484
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 10525546 and ends at 10554166 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRSS55   30824
Cards
Entrez_Gene (NCBI)PRSS55  203074  protease, serine 55
AliasesCT153; T-SP1; TSP1; UNQ9391
GeneCards (Weizmann)PRSS55
Ensembl hg19 (Hinxton)ENSG00000184647 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184647 [Gene_View]  chr8:10525546-10554166 [Contig_View]  PRSS55 [Vega]
ICGC DataPortalENSG00000184647
TCGA cBioPortalPRSS55
AceView (NCBI)PRSS55
Genatlas (Paris)PRSS55
WikiGenes203074
SOURCE (Princeton)PRSS55
Genetics Home Reference (NIH)PRSS55
Genomic and cartography
GoldenPath hg38 (UCSC)PRSS55  -     chr8:10525546-10554166 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRSS55  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblPRSS55 - 8p23.1 [CytoView hg19]  PRSS55 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIPRSS55 [Mapview hg19]  PRSS55 [Mapview hg38]
OMIM615144   
Gene and transcription
Genbank (Entrez)AY358867 BC033497 BC064412
RefSeq transcript (Entrez)NM_001197020 NM_198464
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRSS55
Cluster EST : UnigeneHs.591394 [ NCBI ]
CGAP (NCI)Hs.591394
Alternative Splicing GalleryENSG00000184647
Gene ExpressionPRSS55 [ NCBI-GEO ]   PRSS55 [ EBI - ARRAY_EXPRESS ]   PRSS55 [ SEEK ]   PRSS55 [ MEM ]
Gene Expression Viewer (FireBrowse)PRSS55 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203074
GTEX Portal (Tissue expression)PRSS55
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWB4
Splice isoforms : SwissVarQ6UWB4
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   
PhosPhoSitePlusQ6UWB4
Domaine pattern : Prosite (Expaxy)TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)Peptidase_S1_PA    Peptidase_S1A    Trypsin_dom    TRYPSIN_HIS    TRYPSIN_SER   
Domain families : Pfam (Sanger)Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00089   
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
Conserved Domain (NCBI)PRSS55
DMDM Disease mutations203074
Blocks (Seattle)PRSS55
SuperfamilyQ6UWB4
Human Protein AtlasENSG00000184647
Peptide AtlasQ6UWB4
HPRD07162
IPIIPI00394814   IPI00791637   IPI01014612   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWB4
IntAct (EBI)Q6UWB4
FunCoupENSG00000184647
BioGRIDPRSS55
STRING (EMBL)PRSS55
ZODIACPRSS55
Ontologies - Pathways
QuickGOQ6UWB4
Ontology : AmiGOserine-type endopeptidase activity  cytosol  proteolysis  integral component of membrane  
Ontology : EGO-EBIserine-type endopeptidase activity  cytosol  proteolysis  integral component of membrane  
NDEx NetworkPRSS55
Atlas of Cancer Signalling NetworkPRSS55
Wikipedia pathwaysPRSS55
Orthology - Evolution
OrthoDB203074
GeneTree (enSembl)ENSG00000184647
Phylogenetic Trees/Animal Genes : TreeFamPRSS55
HOVERGENQ6UWB4
HOGENOMQ6UWB4
Homologs : HomoloGenePRSS55
Homology/Alignments : Family Browser (UCSC)PRSS55
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRSS55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRSS55
dbVarPRSS55
ClinVarPRSS55
1000_GenomesPRSS55 
Exome Variant ServerPRSS55
ExAC (Exome Aggregation Consortium)PRSS55 (select the gene name)
Genetic variants : HAPMAP203074
Genomic Variants (DGV)PRSS55 [DGVbeta]
DECIPHERPRSS55 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRSS55 
Mutations
ICGC Data PortalPRSS55 
TCGA Data PortalPRSS55 
Broad Tumor PortalPRSS55
OASIS PortalPRSS55 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRSS55  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRSS55
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRSS55
DgiDB (Drug Gene Interaction Database)PRSS55
DoCM (Curated mutations)PRSS55 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRSS55 (select a term)
intoGenPRSS55
Cancer3DPRSS55(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615144   
Orphanet
MedgenPRSS55
Genetic Testing Registry PRSS55
NextProtQ6UWB4 [Medical]
TSGene203074
GENETestsPRSS55
Huge Navigator PRSS55 [HugePedia]
snp3D : Map Gene to Disease203074
BioCentury BCIQPRSS55
ClinGenPRSS55
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203074
Chemical/Pharm GKB GenePA165585933
Clinical trialPRSS55
Miscellaneous
canSAR (ICR)PRSS55 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRSS55
EVEXPRSS55
GoPubMedPRSS55
iHOPPRSS55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:33:05 CEST 2017

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