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PRSS56 (protease, serine, 56)

Identity

Other aliasMCOP6
HGNC (Hugo) PRSS56
LocusID (NCBI) 646960
Atlas_Id 72318
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 233385173 and ends at 233390425 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRSS56   39433
Cards
Entrez_Gene (NCBI)PRSS56  646960  protease, serine, 56
AliasesMCOP6
GeneCards (Weizmann)PRSS56
Ensembl hg19 (Hinxton)ENSG00000237412 [Gene_View]  chr2:233385173-233390425 [Contig_View]  PRSS56 [Vega]
Ensembl hg38 (Hinxton)ENSG00000237412 [Gene_View]  chr2:233385173-233390425 [Contig_View]  PRSS56 [Vega]
ICGC DataPortalENSG00000237412
TCGA cBioPortalPRSS56
AceView (NCBI)PRSS56
Genatlas (Paris)PRSS56
WikiGenes646960
SOURCE (Princeton)PRSS56
Genetics Home Reference (NIH)PRSS56
Genomic and cartography
GoldenPath hg19 (UCSC)PRSS56  -     chr2:233385173-233390425 +  2q37.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRSS56  -     2q37.1   [Description]    (hg38-Dec_2013)
EnsemblPRSS56 - 2q37.1 [CytoView hg19]  PRSS56 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBIPRSS56 [Mapview hg19]  PRSS56 [Mapview hg38]
OMIM613517   613858   
Gene and transcription
Genbank (Entrez)BI464671 CN280933
RefSeq transcript (Entrez)NM_001195129
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_031969 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)PRSS56
Cluster EST : UnigeneHs.570310 [ NCBI ]
CGAP (NCI)Hs.570310
Alternative Splicing GalleryENSG00000237412
Gene ExpressionPRSS56 [ NCBI-GEO ]   PRSS56 [ EBI - ARRAY_EXPRESS ]   PRSS56 [ SEEK ]   PRSS56 [ MEM ]
Gene Expression Viewer (FireBrowse)PRSS56 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646960
GTEX Portal (Tissue expression)PRSS56
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CW18   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CW18  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CW18
Splice isoforms : SwissVarP0CW18
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   
PhosPhoSitePlusP0CW18
Domaine pattern : Prosite (Expaxy)TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)Peptidase_S1    Peptidase_S1_AS    Peptidase_S1A    Trypsin-like_Pept_dom   
Domain families : Pfam (Sanger)Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00089   
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
Conserved Domain (NCBI)PRSS56
DMDM Disease mutations646960
Blocks (Seattle)PRSS56
SuperfamilyP0CW18
Human Protein AtlasENSG00000237412
Peptide AtlasP0CW18
IPIIPI00983368   
Protein Interaction databases
DIP (DOE-UCLA)P0CW18
IntAct (EBI)P0CW18
FunCoupENSG00000237412
BioGRIDPRSS56
STRING (EMBL)PRSS56
ZODIACPRSS56
Ontologies - Pathways
QuickGOP0CW18
Ontology : AmiGOserine-type endopeptidase activity  endoplasmic reticulum  proteolysis  camera-type eye development  
Ontology : EGO-EBIserine-type endopeptidase activity  endoplasmic reticulum  proteolysis  camera-type eye development  
NDEx NetworkPRSS56
Atlas of Cancer Signalling NetworkPRSS56
Wikipedia pathwaysPRSS56
Orthology - Evolution
OrthoDB646960
GeneTree (enSembl)ENSG00000237412
Phylogenetic Trees/Animal Genes : TreeFamPRSS56
HOVERGENP0CW18
HOGENOMP0CW18
Homologs : HomoloGenePRSS56
Homology/Alignments : Family Browser (UCSC)PRSS56
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRSS56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRSS56
dbVarPRSS56
ClinVarPRSS56
1000_GenomesPRSS56 
Exome Variant ServerPRSS56
ExAC (Exome Aggregation Consortium)PRSS56 (select the gene name)
Genetic variants : HAPMAP646960
Genomic Variants (DGV)PRSS56 [DGVbeta]
DECIPHER (Syndromes)2:233385173-233390425  ENSG00000237412
CONAN: Copy Number AnalysisPRSS56 
Mutations
ICGC Data PortalPRSS56 
TCGA Data PortalPRSS56 
Broad Tumor PortalPRSS56
OASIS PortalPRSS56 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRSS56
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch PRSS56
DgiDB (Drug Gene Interaction Database)PRSS56
DoCM (Curated mutations)PRSS56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRSS56 (select a term)
intoGenPRSS56
Cancer3DPRSS56(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613517    613858   
Orphanet10378   
MedgenPRSS56
Genetic Testing Registry PRSS56
NextProtP0CW18 [Medical]
TSGene646960
GENETestsPRSS56
Huge Navigator PRSS56 [HugePedia]
snp3D : Map Gene to Disease646960
BioCentury BCIQPRSS56
ClinGenPRSS56
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646960
Clinical trialPRSS56
Miscellaneous
canSAR (ICR)PRSS56 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRSS56
EVEXPRSS56
GoPubMedPRSS56
iHOPPRSS56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:01 CET 2017

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