Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRTG (protogenin)

Identity

Alias_namesprotogenin homolog (Gallus gallus)
Alias_symbol (synonym)FLJ25756
IGDCC5
Other alias
HGNC (Hugo) PRTG
LocusID (NCBI) 283659
Atlas_Id 72321
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 55903739 and ends at 56035317 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRTG   26373
Cards
Entrez_Gene (NCBI)PRTG  283659  protogenin
AliasesIGDCC5
GeneCards (Weizmann)PRTG
Ensembl hg19 (Hinxton)ENSG00000166450 [Gene_View]  chr15:55903739-56035317 [Contig_View]  PRTG [Vega]
Ensembl hg38 (Hinxton)ENSG00000166450 [Gene_View]  chr15:55903739-56035317 [Contig_View]  PRTG [Vega]
ICGC DataPortalENSG00000166450
TCGA cBioPortalPRTG
AceView (NCBI)PRTG
Genatlas (Paris)PRTG
WikiGenes283659
SOURCE (Princeton)PRTG
Genetics Home Reference (NIH)PRTG
Genomic and cartography
GoldenPath hg19 (UCSC)PRTG  -     chr15:55903739-56035317 -  15q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRTG  -     15q21.3   [Description]    (hg38-Dec_2013)
EnsemblPRTG - 15q21.3 [CytoView hg19]  PRTG - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBIPRTG [Mapview hg19]  PRTG [Mapview hg38]
OMIM613261   
Gene and transcription
Genbank (Entrez)AA912476 AK022857 AK023283 AK098622 AY630258
RefSeq transcript (Entrez)NM_173814
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)PRTG
Cluster EST : UnigeneHs.130957 [ NCBI ]
CGAP (NCI)Hs.130957
Alternative Splicing GalleryENSG00000166450
Gene ExpressionPRTG [ NCBI-GEO ]   PRTG [ EBI - ARRAY_EXPRESS ]   PRTG [ SEEK ]   PRTG [ MEM ]
Gene Expression Viewer (FireBrowse)PRTG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283659
GTEX Portal (Tissue expression)PRTG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2VWP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2VWP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2VWP7
Splice isoforms : SwissVarQ2VWP7
PhosPhoSitePlusQ2VWP7
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub2   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IGc2 (SM00408)  
Conserved Domain (NCBI)PRTG
DMDM Disease mutations283659
Blocks (Seattle)PRTG
SuperfamilyQ2VWP7
Human Protein AtlasENSG00000166450
Peptide AtlasQ2VWP7
HPRD18765
IPIIPI00658004   
Protein Interaction databases
DIP (DOE-UCLA)Q2VWP7
IntAct (EBI)Q2VWP7
FunCoupENSG00000166450
BioGRIDPRTG
STRING (EMBL)PRTG
ZODIACPRTG
Ontologies - Pathways
QuickGOQ2VWP7
Ontology : AmiGOextracellular space  multicellular organismal development  integral component of membrane  
Ontology : EGO-EBIextracellular space  multicellular organismal development  integral component of membrane  
NDEx NetworkPRTG
Atlas of Cancer Signalling NetworkPRTG
Wikipedia pathwaysPRTG
Orthology - Evolution
OrthoDB283659
GeneTree (enSembl)ENSG00000166450
Phylogenetic Trees/Animal Genes : TreeFamPRTG
HOVERGENQ2VWP7
HOGENOMQ2VWP7
Homologs : HomoloGenePRTG
Homology/Alignments : Family Browser (UCSC)PRTG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRTG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRTG
dbVarPRTG
ClinVarPRTG
1000_GenomesPRTG 
Exome Variant ServerPRTG
ExAC (Exome Aggregation Consortium)PRTG (select the gene name)
Genetic variants : HAPMAP283659
Genomic Variants (DGV)PRTG [DGVbeta]
DECIPHER (Syndromes)15:55903739-56035317  ENSG00000166450
CONAN: Copy Number AnalysisPRTG 
Mutations
ICGC Data PortalPRTG 
TCGA Data PortalPRTG 
Broad Tumor PortalPRTG
OASIS PortalPRTG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRTG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRTG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRTG
DgiDB (Drug Gene Interaction Database)PRTG
DoCM (Curated mutations)PRTG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRTG (select a term)
intoGenPRTG
Cancer3DPRTG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613261   
Orphanet
MedgenPRTG
Genetic Testing Registry PRTG
NextProtQ2VWP7 [Medical]
TSGene283659
GENETestsPRTG
Huge Navigator PRTG [HugePedia]
snp3D : Map Gene to Disease283659
BioCentury BCIQPRTG
ClinGenPRTG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283659
Chemical/Pharm GKB GenePA142671124
Clinical trialPRTG
Miscellaneous
canSAR (ICR)PRTG (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRTG
EVEXPRTG
GoPubMedPRTG
iHOPPRTG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:40:02 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.