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PRX (periaxin)

Identity

Alias_symbol (synonym)KIAA1620
Other aliasCMT4F
HGNC (Hugo) PRX
LocusID (NCBI) 57716
Atlas_Id 72322
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 40899671 and ends at 40919271 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZFP30 (19q13.12) / PRX (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRX   13797
LRG (Locus Reference Genomic)LRG_265
Cards
Entrez_Gene (NCBI)PRX  57716  periaxin
AliasesCMT4F
GeneCards (Weizmann)PRX
Ensembl hg19 (Hinxton)ENSG00000105227 [Gene_View]  chr19:40899671-40919271 [Contig_View]  PRX [Vega]
Ensembl hg38 (Hinxton)ENSG00000105227 [Gene_View]  chr19:40899671-40919271 [Contig_View]  PRX [Vega]
ICGC DataPortalENSG00000105227
TCGA cBioPortalPRX
AceView (NCBI)PRX
Genatlas (Paris)PRX
WikiGenes57716
SOURCE (Princeton)PRX
Genetics Home Reference (NIH)PRX
Genomic and cartography
GoldenPath hg19 (UCSC)PRX  -     chr19:40899671-40919271 -  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PRX  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblPRX - 19q13.2 [CytoView hg19]  PRX - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIPRX [Mapview hg19]  PRX [Mapview hg38]
OMIM145900   605725   614895   
Gene and transcription
Genbank (Entrez)AB046840 AF321191 AF321192 BC067266 CD674402
RefSeq transcript (Entrez)NM_020956 NM_181882
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_007979 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)PRX
Cluster EST : UnigeneHs.205457 [ NCBI ]
CGAP (NCI)Hs.205457
Alternative Splicing GalleryENSG00000105227
Gene ExpressionPRX [ NCBI-GEO ]   PRX [ EBI - ARRAY_EXPRESS ]   PRX [ SEEK ]   PRX [ MEM ]
Gene Expression Viewer (FireBrowse)PRX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57716
GTEX Portal (Tissue expression)PRX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXM0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXM0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXM0
Splice isoforms : SwissVarQ9BXM0
PhosPhoSitePlusQ9BXM0
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)PRX
DMDM Disease mutations57716
Blocks (Seattle)PRX
PDB (SRS)4CMZ   
PDB (PDBSum)4CMZ   
PDB (IMB)4CMZ   
PDB (RSDB)4CMZ   
Structural Biology KnowledgeBase4CMZ   
SCOP (Structural Classification of Proteins)4CMZ   
CATH (Classification of proteins structures)4CMZ   
SuperfamilyQ9BXM0
Human Protein AtlasENSG00000105227
Peptide AtlasQ9BXM0
HPRD05758
IPIIPI00024853   IPI00221068   IPI00953550   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXM0
IntAct (EBI)Q9BXM0
FunCoupENSG00000105227
BioGRIDPRX
STRING (EMBL)PRX
ZODIACPRX
Ontologies - Pathways
QuickGOQ9BXM0
Ontology : AmiGOmolecular_function  protein binding  cellular_component  nucleus  cytoplasm  plasma membrane  axon ensheathment  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  nucleus  cytoplasm  plasma membrane  axon ensheathment  
NDEx NetworkPRX
Atlas of Cancer Signalling NetworkPRX
Wikipedia pathwaysPRX
Orthology - Evolution
OrthoDB57716
GeneTree (enSembl)ENSG00000105227
Phylogenetic Trees/Animal Genes : TreeFamPRX
HOVERGENQ9BXM0
HOGENOMQ9BXM0
Homologs : HomoloGenePRX
Homology/Alignments : Family Browser (UCSC)PRX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRX
dbVarPRX
ClinVarPRX
1000_GenomesPRX 
Exome Variant ServerPRX
ExAC (Exome Aggregation Consortium)PRX (select the gene name)
Genetic variants : HAPMAP57716
Genomic Variants (DGV)PRX [DGVbeta]
DECIPHER (Syndromes)19:40899671-40919271  ENSG00000105227
CONAN: Copy Number AnalysisPRX 
Mutations
ICGC Data PortalPRX 
TCGA Data PortalPRX 
Broad Tumor PortalPRX
OASIS PortalPRX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRX
DgiDB (Drug Gene Interaction Database)PRX
DoCM (Curated mutations)PRX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRX (select a term)
intoGenPRX
Cancer3DPRX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM145900    605725    614895   
Orphanet10852    14525   
MedgenPRX
Genetic Testing Registry PRX
NextProtQ9BXM0 [Medical]
TSGene57716
GENETestsPRX
Huge Navigator PRX [HugePedia]
snp3D : Map Gene to Disease57716
BioCentury BCIQPRX
ClinGenPRX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57716
Chemical/Pharm GKB GenePA33843
Clinical trialPRX
Miscellaneous
canSAR (ICR)PRX (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRX
EVEXPRX
GoPubMedPRX
iHOPPRX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:40:02 CET 2017

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