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X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PRY (PTPN13-like, Y-linked)

Identity

Alias_symbol (synonym)PTPN13LY
PRY1
Other alias
HGNC (Hugo) PRY
LocusID (NCBI) 9081
Atlas_Id 72323
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 22071756 and ends at 22096007 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRY   14024
Cards
Entrez_Gene (NCBI)PRY  9081  PTPN13-like, Y-linked
AliasesPRY1; PTPN13LY
GeneCards (Weizmann)PRY
Ensembl hg19 (Hinxton)ENSG00000169789 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169789 [Gene_View]  chrY:22071756-22096007 [Contig_View]  PRY [Vega]
ICGC DataPortalENSG00000169789
TCGA cBioPortalPRY
AceView (NCBI)PRY
Genatlas (Paris)PRY
WikiGenes9081
SOURCE (Princeton)PRY
Genetics Home Reference (NIH)PRY
Genomic and cartography
GoldenPath hg38 (UCSC)PRY  -     chrY:22071756-22096007 -  Yq11.223   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRY  -     Yq11.223   [Description]    (hg19-Feb_2009)
EnsemblPRY - Yq11.223 [CytoView hg19]  PRY - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIPRY [Mapview hg19]  PRY [Mapview hg38]
OMIM400019   415000   
Gene and transcription
Genbank (Entrez)AF000988 AF517635 BC113548 BC113550 BC143893
RefSeq transcript (Entrez)NM_004676
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRY
Cluster EST : UnigeneHs.158343 [ NCBI ]
CGAP (NCI)Hs.158343
Alternative Splicing GalleryENSG00000169789
Gene ExpressionPRY [ NCBI-GEO ]   PRY [ EBI - ARRAY_EXPRESS ]   PRY [ SEEK ]   PRY [ MEM ]
Gene Expression Viewer (FireBrowse)PRY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9081
GTEX Portal (Tissue expression)PRY
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14603   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14603  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14603
Splice isoforms : SwissVarO14603
PhosPhoSitePlusO14603
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRY
DMDM Disease mutations9081
Blocks (Seattle)PRY
SuperfamilyO14603
Human Protein AtlasENSG00000169789
Peptide AtlasO14603
HPRD02460
Protein Interaction databases
DIP (DOE-UCLA)O14603
IntAct (EBI)O14603
FunCoupENSG00000169789
BioGRIDPRY
STRING (EMBL)PRY
ZODIACPRY
Ontologies - Pathways
QuickGOO14603
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRY
Atlas of Cancer Signalling NetworkPRY
Wikipedia pathwaysPRY
Orthology - Evolution
OrthoDB9081
GeneTree (enSembl)ENSG00000169789
Phylogenetic Trees/Animal Genes : TreeFamPRY
HOVERGENO14603
HOGENOMO14603
Homologs : HomoloGenePRY
Homology/Alignments : Family Browser (UCSC)PRY
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRY
dbVarPRY
ClinVarPRY
1000_GenomesPRY 
Exome Variant ServerPRY
ExAC (Exome Aggregation Consortium)PRY (select the gene name)
Genetic variants : HAPMAP9081
Genomic Variants (DGV)PRY [DGVbeta]
DECIPHERPRY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRY 
Mutations
ICGC Data PortalPRY 
TCGA Data PortalPRY 
Broad Tumor PortalPRY
OASIS PortalPRY [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRY
DgiDB (Drug Gene Interaction Database)PRY
DoCM (Curated mutations)PRY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRY (select a term)
intoGenPRY
Cancer3DPRY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400019    415000   
Orphanet
MedgenPRY
Genetic Testing Registry PRY
NextProtO14603 [Medical]
TSGene9081
GENETestsPRY
Target ValidationPRY
Huge Navigator PRY [HugePedia]
snp3D : Map Gene to Disease9081
BioCentury BCIQPRY
ClinGenPRY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9081
Chemical/Pharm GKB GenePA33844
Clinical trialPRY
Miscellaneous
canSAR (ICR)PRY (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRY
EVEXPRY
GoPubMedPRY
iHOPPRY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:35:31 CEST 2017

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