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PRY2 (PTPN13-like, Y-linked 2)

Identity

Alias_symbol (synonym)PTPN13LY2
Other alias
HGNC (Hugo) PRY2
LocusID (NCBI) 442862
Atlas_Id 72324
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 22071756 and ends at 22096007 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PRY2   21504
Cards
Entrez_Gene (NCBI)PRY2  442862  PTPN13-like, Y-linked 2
AliasesPTPN13LY2
GeneCards (Weizmann)PRY2
Ensembl hg19 (Hinxton)ENSG00000169807 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169807 [Gene_View]  chrY:22071756-22096007 [Contig_View]  PRY2 [Vega]
ICGC DataPortalENSG00000169807
TCGA cBioPortalPRY2
AceView (NCBI)PRY2
Genatlas (Paris)PRY2
WikiGenes442862
SOURCE (Princeton)PRY2
Genetics Home Reference (NIH)PRY2
Genomic and cartography
GoldenPath hg38 (UCSC)PRY2  -     chrY:22071756-22096007 -  Yq11.223   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRY2  -     Yq11.223   [Description]    (hg19-Feb_2009)
EnsemblPRY2 - Yq11.223 [CytoView hg19]  PRY2 - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIPRY2 [Mapview hg19]  PRY2 [Mapview hg38]
OMIM400041   415000   
Gene and transcription
Genbank (Entrez)BC148536 BC153128
RefSeq transcript (Entrez)NM_001002758
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRY2
Cluster EST : UnigeneHs.632847 [ NCBI ]
CGAP (NCI)Hs.632847
Alternative Splicing GalleryENSG00000169807
Gene ExpressionPRY2 [ NCBI-GEO ]   PRY2 [ EBI - ARRAY_EXPRESS ]   PRY2 [ SEEK ]   PRY2 [ MEM ]
Gene Expression Viewer (FireBrowse)PRY2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442862
GTEX Portal (Tissue expression)PRY2
Human Protein AtlasENSG00000169807-PRY2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14603   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14603  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14603
Splice isoforms : SwissVarO14603
PhosPhoSitePlusO14603
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRY2
DMDM Disease mutations442862
Blocks (Seattle)PRY2
SuperfamilyO14603
Human Protein Atlas [tissue]ENSG00000169807-PRY2 [tissue]
Peptide AtlasO14603
HPRD11851
IPIIPI00005839   IPI00218478   
Protein Interaction databases
DIP (DOE-UCLA)O14603
IntAct (EBI)O14603
FunCoupENSG00000169807
BioGRIDPRY2
STRING (EMBL)PRY2
ZODIACPRY2
Ontologies - Pathways
QuickGOO14603
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRY2
Atlas of Cancer Signalling NetworkPRY2
Wikipedia pathwaysPRY2
Orthology - Evolution
OrthoDB442862
GeneTree (enSembl)ENSG00000169807
Phylogenetic Trees/Animal Genes : TreeFamPRY2
HOVERGENO14603
HOGENOMO14603
Homologs : HomoloGenePRY2
Homology/Alignments : Family Browser (UCSC)PRY2
Gene fusions - Rearrangements
Tumor Fusion PortalPRY2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRY2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRY2
dbVarPRY2
ClinVarPRY2
1000_GenomesPRY2 
Exome Variant ServerPRY2
ExAC (Exome Aggregation Consortium)ENSG00000169807
GNOMAD BrowserENSG00000169807
Genetic variants : HAPMAP442862
Genomic Variants (DGV)PRY2 [DGVbeta]
DECIPHERPRY2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRY2 
Mutations
ICGC Data PortalPRY2 
TCGA Data PortalPRY2 
Broad Tumor PortalPRY2
OASIS PortalPRY2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPRY2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPRY2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PRY2
DgiDB (Drug Gene Interaction Database)PRY2
DoCM (Curated mutations)PRY2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRY2 (select a term)
intoGenPRY2
Cancer3DPRY2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400041    415000   
Orphanet
DisGeNETPRY2
MedgenPRY2
Genetic Testing Registry PRY2
NextProtO14603 [Medical]
TSGene442862
GENETestsPRY2
Target ValidationPRY2
Huge Navigator PRY2 [HugePedia]
snp3D : Map Gene to Disease442862
BioCentury BCIQPRY2
ClinGenPRY2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442862
Chemical/Pharm GKB GenePA134964356
Clinical trialPRY2
Miscellaneous
canSAR (ICR)PRY2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRY2
EVEXPRY2
GoPubMedPRY2
iHOPPRY2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:01:08 CET 2017

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