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PRYP4 (PTPN13-like, Y-linked pseudogene 4)

Identity

Other alias-
HGNC (Hugo) PRYP4
LocusID (NCBI) 442866
Atlas_Id 72325
Location Yq11.23  [Link to chromosome band Yq11]
Location_base_pair Starts at 25975549 and ends at 25988067 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PRYP4   34021
Cards
Entrez_Gene (NCBI)PRYP4  442866  PTPN13-like, Y-linked pseudogene 4
Aliases
GeneCards (Weizmann)PRYP4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrY:25975549-25988067 [Contig_View]  PRYP4 [Vega]
TCGA cBioPortalPRYP4
AceView (NCBI)PRYP4
Genatlas (Paris)PRYP4
WikiGenes442866
SOURCE (Princeton)PRYP4
Genetics Home Reference (NIH)PRYP4
Genomic and cartography
GoldenPath hg38 (UCSC)PRYP4  -     chrY:25975549-25988067 +  Yq11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRYP4  -     Yq11.23   [Description]    (hg19-Feb_2009)
EnsemblPRYP4 - Yq11.23 [CytoView hg19]  PRYP4 - Yq11.23 [CytoView hg38]
Mapping of homologs : NCBIPRYP4 [Mapview hg19]  PRYP4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)HQ258074
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRYP4
Gene ExpressionPRYP4 [ NCBI-GEO ]   PRYP4 [ EBI - ARRAY_EXPRESS ]   PRYP4 [ SEEK ]   PRYP4 [ MEM ]
Gene Expression Viewer (FireBrowse)PRYP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442866
GTEX Portal (Tissue expression)PRYP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14603   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14603  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14603
Splice isoforms : SwissVarO14603
PhosPhoSitePlusO14603
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRYP4
DMDM Disease mutations442866
Blocks (Seattle)PRYP4
SuperfamilyO14603
Peptide AtlasO14603
Protein Interaction databases
DIP (DOE-UCLA)O14603
IntAct (EBI)O14603
BioGRIDPRYP4
STRING (EMBL)PRYP4
ZODIACPRYP4
Ontologies - Pathways
QuickGOO14603
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPRYP4
Atlas of Cancer Signalling NetworkPRYP4
Wikipedia pathwaysPRYP4
Orthology - Evolution
OrthoDB442866
Phylogenetic Trees/Animal Genes : TreeFamPRYP4
HOVERGENO14603
HOGENOMO14603
Homologs : HomoloGenePRYP4
Homology/Alignments : Family Browser (UCSC)PRYP4
Gene fusions - Rearrangements
Tumor Fusion PortalPRYP4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPRYP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PRYP4
dbVarPRYP4
ClinVarPRYP4
1000_GenomesPRYP4 
Exome Variant ServerPRYP4
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP442866
Genomic Variants (DGV)PRYP4 [DGVbeta]
DECIPHERPRYP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPRYP4 
Mutations
ICGC Data PortalPRYP4 
TCGA Data PortalPRYP4 
Broad Tumor PortalPRYP4
OASIS PortalPRYP4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPRYP4
BioMutasearch PRYP4
DgiDB (Drug Gene Interaction Database)PRYP4
DoCM (Curated mutations)PRYP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PRYP4 (select a term)
intoGenPRYP4
Cancer3DPRYP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPRYP4
MedgenPRYP4
Genetic Testing Registry PRYP4
NextProtO14603 [Medical]
TSGene442866
GENETestsPRYP4
Target ValidationPRYP4
Huge Navigator PRYP4 [HugePedia]
snp3D : Map Gene to Disease442866
BioCentury BCIQPRYP4
ClinGenPRYP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442866
Clinical trialPRYP4
Miscellaneous
canSAR (ICR)PRYP4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePRYP4
EVEXPRYP4
GoPubMedPRYP4
iHOPPRYP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:01:09 CET 2017

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