Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PSAPL1 (prosaposin-like 1 (gene/pseudogene))

Identity

Alias_namesprosaposin-like 1
Other alias-
HGNC (Hugo) PSAPL1
LocusID (NCBI) 768239
Atlas_Id 72327
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 7432021 and ends at 7436700 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSAPL1   33131
Cards
Entrez_Gene (NCBI)PSAPL1  768239  prosaposin-like 1 (gene/pseudogene)
Aliases
GeneCards (Weizmann)PSAPL1
Ensembl hg19 (Hinxton) [Gene_View]  chr4:7432021-7436700 [Contig_View]  PSAPL1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:7432021-7436700 [Contig_View]  PSAPL1 [Vega]
TCGA cBioPortalPSAPL1
AceView (NCBI)PSAPL1
Genatlas (Paris)PSAPL1
WikiGenes768239
SOURCE (Princeton)PSAPL1
Genetics Home Reference (NIH)PSAPL1
Genomic and cartography
GoldenPath hg19 (UCSC)PSAPL1  -     chr4:7432021-7436700 -  4p16.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PSAPL1  -     4p16.1   [Description]    (hg38-Dec_2013)
EnsemblPSAPL1 - 4p16.1 [CytoView hg19]  PSAPL1 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIPSAPL1 [Mapview hg19]  PSAPL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097698 BC034552 BC048325 BC063708 BC068579
RefSeq transcript (Entrez)NM_001085382
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006051 NW_004929314
Consensus coding sequences : CCDS (NCBI)PSAPL1
Cluster EST : UnigeneHs.662523 [ NCBI ]
CGAP (NCI)Hs.662523
Gene ExpressionPSAPL1 [ NCBI-GEO ]   PSAPL1 [ EBI - ARRAY_EXPRESS ]   PSAPL1 [ SEEK ]   PSAPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)PSAPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)768239
GTEX Portal (Tissue expression)PSAPL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUJ1
Splice isoforms : SwissVarQ6NUJ1
PhosPhoSitePlusQ6NUJ1
Domaine pattern : Prosite (Expaxy)SAP_A (PS51110)    SAP_B (PS50015)   
Domains : Interpro (EBI)SapA    SapB_1    SapB_2    Saposin    Saposin-like    Saposin_chordata    SaposinB   
Domain families : Pfam (Sanger)SapA (PF02199)    SapB_1 (PF05184)    SapB_2 (PF03489)   
Domain families : Pfam (NCBI)pfam02199    pfam05184    pfam03489   
Domain families : Smart (EMBL)SAPA (SM00162)  SapB (SM00741)  
Conserved Domain (NCBI)PSAPL1
DMDM Disease mutations768239
Blocks (Seattle)PSAPL1
SuperfamilyQ6NUJ1
Peptide AtlasQ6NUJ1
IPIIPI00163920   IPI00978488   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUJ1
IntAct (EBI)Q6NUJ1
BioGRIDPSAPL1
STRING (EMBL)PSAPL1
ZODIACPSAPL1
Ontologies - Pathways
QuickGOQ6NUJ1
Ontology : AmiGOextracellular region  cytoplasm  lysosome  sphingolipid metabolic process  
Ontology : EGO-EBIextracellular region  cytoplasm  lysosome  sphingolipid metabolic process  
Pathways : KEGGLysosome   
NDEx NetworkPSAPL1
Atlas of Cancer Signalling NetworkPSAPL1
Wikipedia pathwaysPSAPL1
Orthology - Evolution
OrthoDB768239
Phylogenetic Trees/Animal Genes : TreeFamPSAPL1
HOVERGENQ6NUJ1
HOGENOMQ6NUJ1
Homologs : HomoloGenePSAPL1
Homology/Alignments : Family Browser (UCSC)PSAPL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSAPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSAPL1
dbVarPSAPL1
ClinVarPSAPL1
1000_GenomesPSAPL1 
Exome Variant ServerPSAPL1
ExAC (Exome Aggregation Consortium)PSAPL1 (select the gene name)
Genetic variants : HAPMAP768239
Genomic Variants (DGV)PSAPL1 [DGVbeta]
DECIPHER (Syndromes)4:7432021-7436700  
CONAN: Copy Number AnalysisPSAPL1 
Mutations
ICGC Data PortalPSAPL1 
TCGA Data PortalPSAPL1 
Broad Tumor PortalPSAPL1
OASIS PortalPSAPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSAPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSAPL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSAPL1
DgiDB (Drug Gene Interaction Database)PSAPL1
DoCM (Curated mutations)PSAPL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSAPL1 (select a term)
intoGenPSAPL1
Cancer3DPSAPL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPSAPL1
Genetic Testing Registry PSAPL1
NextProtQ6NUJ1 [Medical]
TSGene768239
GENETestsPSAPL1
Huge Navigator PSAPL1 [HugePedia]
snp3D : Map Gene to Disease768239
BioCentury BCIQPSAPL1
ClinGenPSAPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD768239
Chemical/Pharm GKB GenePA162400215
Clinical trialPSAPL1
Miscellaneous
canSAR (ICR)PSAPL1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSAPL1
EVEXPSAPL1
GoPubMedPSAPL1
iHOPPSAPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:40:03 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.