Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PSG1 (pregnancy specific beta-1-glycoprotein 1)

Identity

Alias_namesPSBG1
Alias_symbol (synonym)PSGGA
CD66f
PBG1
Other aliasB1G1
DHFRP2
FL-NCA-1/2
PS-beta-C/D
PS-beta-G-1
PSBG-1
PSG95
PSGIIA
SP1
HGNC (Hugo) PSG1
LocusID (NCBI) 5669
Atlas_Id 56377
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 42866461 and ends at 42879719 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PFKP (10p15.2) / PSG1 (19q13.2)PSG1 (19q13.2) / SPINK1 (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSG1   9514
Cards
Entrez_Gene (NCBI)PSG1  5669  pregnancy specific beta-1-glycoprotein 1
AliasesB1G1; CD66f; DHFRP2; FL-NCA-1/2; 
PBG1; PS-beta-C/D; PS-beta-G-1; PSBG-1; PSBG1; PSG95; PSGGA; PSGIIA; SP1
GeneCards (Weizmann)PSG1
Ensembl hg19 (Hinxton)ENSG00000231924 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231924 [Gene_View]  chr19:42866461-42879719 [Contig_View]  PSG1 [Vega]
ICGC DataPortalENSG00000231924
TCGA cBioPortalPSG1
AceView (NCBI)PSG1
Genatlas (Paris)PSG1
WikiGenes5669
SOURCE (Princeton)PSG1
Genetics Home Reference (NIH)PSG1
Genomic and cartography
GoldenPath hg38 (UCSC)PSG1  -     chr19:42866461-42879719 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSG1  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblPSG1 - 19q13.2 [CytoView hg19]  PSG1 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIPSG1 [Mapview hg19]  PSG1 [Mapview hg38]
OMIM176390   
Gene and transcription
Genbank (Entrez)AK056754 AK300152 AK300206 AK311491 AM393198
RefSeq transcript (Entrez)NM_001184825 NM_001184826 NM_001297773 NM_001330524 NM_006905
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSG1
Cluster EST : UnigeneHs.709192 [ NCBI ]
CGAP (NCI)Hs.709192
Alternative Splicing GalleryENSG00000231924
Gene ExpressionPSG1 [ NCBI-GEO ]   PSG1 [ EBI - ARRAY_EXPRESS ]   PSG1 [ SEEK ]   PSG1 [ MEM ]
Gene Expression Viewer (FireBrowse)PSG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5669
GTEX Portal (Tissue expression)PSG1
Human Protein AtlasENSG00000231924-PSG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11464   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP11464  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP11464
Splice isoforms : SwissVarP11464
PhosPhoSitePlusP11464
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)PSG1
DMDM Disease mutations5669
Blocks (Seattle)PSG1
SuperfamilyP11464
Human Protein Atlas [tissue]ENSG00000231924-PSG1 [tissue]
Peptide AtlasP11464
HPRD01449
IPIIPI00827782   
Protein Interaction databases
DIP (DOE-UCLA)P11464
IntAct (EBI)P11464
FunCoupENSG00000231924
BioGRIDPSG1
STRING (EMBL)PSG1
ZODIACPSG1
Ontologies - Pathways
QuickGOP11464
Ontology : AmiGOprotein binding  extracellular region  female pregnancy  leukocyte migration  
Ontology : EGO-EBIprotein binding  extracellular region  female pregnancy  leukocyte migration  
NDEx NetworkPSG1
Atlas of Cancer Signalling NetworkPSG1
Wikipedia pathwaysPSG1
Orthology - Evolution
OrthoDB5669
GeneTree (enSembl)ENSG00000231924
Phylogenetic Trees/Animal Genes : TreeFamPSG1
HOVERGENP11464
HOGENOMP11464
Homologs : HomoloGenePSG1
Homology/Alignments : Family Browser (UCSC)PSG1
Gene fusions - Rearrangements
Fusion: Tumor Portal PSG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSG1
dbVarPSG1
ClinVarPSG1
1000_GenomesPSG1 
Exome Variant ServerPSG1
ExAC (Exome Aggregation Consortium)ENSG00000231924
GNOMAD BrowserENSG00000231924
Genetic variants : HAPMAP5669
Genomic Variants (DGV)PSG1 [DGVbeta]
DECIPHERPSG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSG1 
Mutations
ICGC Data PortalPSG1 
TCGA Data PortalPSG1 
Broad Tumor PortalPSG1
OASIS PortalPSG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSG1
DgiDB (Drug Gene Interaction Database)PSG1
DoCM (Curated mutations)PSG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSG1 (select a term)
intoGenPSG1
Cancer3DPSG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176390   
Orphanet
MedgenPSG1
Genetic Testing Registry PSG1
NextProtP11464 [Medical]
TSGene5669
GENETestsPSG1
Target ValidationPSG1
Huge Navigator PSG1 [HugePedia]
snp3D : Map Gene to Disease5669
BioCentury BCIQPSG1
ClinGenPSG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5669
Chemical/Pharm GKB GenePA33861
Clinical trialPSG1
Miscellaneous
canSAR (ICR)PSG1 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSG1
EVEXPSG1
GoPubMedPSG1
iHOPPSG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:06:57 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.