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PSG11 (pregnancy specific beta-1-glycoprotein 11)

Identity

Alias_namesPSG13
PSG14
Alias_symbol (synonym)MGC22484
Other aliasPSBG-11
PSBG-13
HGNC (Hugo) PSG11
LocusID (NCBI) 5680
Atlas_Id 72330
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43007657 and ends at 43026479 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

Stsong>DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSG11   9516
Cards
Entrez_Gene (NCBI)PSG11  5680  pregnancy specific beta-1-glycoprotein 11
AliasesPSBG-11; PSBG-13; PSG13; PSG14
GeneCards (Weizmann)PSG11
Ensembl hg19 (Hinxton)ENSG00000243130 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243130 [Gene_View]  chr19:43007657-43026479 [Contig_View]  PSG11 [Vega]
ICGC DataPortalENSG00000243130
TCGA cBioPortalPSG11
AceView (NCBI)PSG11
Genatlas (Paris)PSG11
WikiGenes5680
SOURCE (Princeton)PSG11
Genetics Home Reference (NIH)PSG11
Genomic and cartography
GoldenPath hg38 (UCSC)PSG11  -     chr19:43007657-43026479 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSG11  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblPSG11 - 19q13.31 [CytoView hg19]  PSG11 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIPSG11 [Mapview hg19]  PSG11 [Mapview hg38]
OMIM176401   
Gene and transcription
Genbank (Entrez)BC020711 BE767872 BF084984 BG571293 BG619770
RefSeq transcript (Entrez)NM_001113410 NM_002785 NM_203287
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSG11
Cluster EST : UnigeneHs.741150 [ NCBI ]
CGAP (NCI)Hs.741150
Alternative Splicing GalleryENSG00000243130
Gene ExpressionPSG11 [ NCBI-GEO ]   PSG11 [ EBI - ARRAY_EXPRESS ]   PSG11 [ SEEK ]   PSG11 [ MEM ]
Gene Expression Viewer (FireBrowse)PSG11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5680
GTEX Portal (Tissue expression)PSG11
Human Protein AtlasENSG00000243130-PSG11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UQ72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UQ72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UQ72
Splice isoforms : SwissVarQ9UQ72
PhosPhoSitePlusQ9UQ72
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)PSG11
DMDM Disease mutations5680
Blocks (Seattle)PSG11
SuperfamilyQ9UQ72
Human Protein Atlas [tissue]ENSG00000243130-PSG11 [tissue]
Peptide AtlasQ9UQ72
HPRD08898
IPIIPI00893583   IPI00291680   
Protein Interaction databases
DIP (DOE-UCLA)Q9UQ72
IntAct (EBI)Q9UQ72
FunCoupENSG00000243130
BioGRIDPSG11
STRING (EMBL)PSG11
ZODIACPSG11
Ontologies - Pathways
QuickGOQ9UQ72
Ontology : AmiGOextracellular region  female pregnancy  
Ontology : EGO-EBIextracellular region  female pregnancy  
NDEx NetworkPSG11
Atlas of Cancer Signalling NetworkPSG11
Wikipedia pathwaysPSG11
Orthology - Evolution
OrthoDB5680
GeneTree (enSembl)ENSG00000243130
Phylogenetic Trees/Animal Genes : TreeFamPSG11
HOVERGENQ9UQ72
HOGENOMQ9UQ72
Homologs : HomoloGenePSG11
Homology/Alignments : Family Browser (UCSC)PSG11
Gene fusions - Rearrangements
Fusion: Tumor Portal PSG11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSG11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSG11
dbVarPSG11
ClinVarPSG11
1000_GenomesPSG11 
Exome Variant ServerPSG11
ExAC (Exome Aggregation Consortium)ENSG00000243130
GNOMAD BrowserENSG00000243130
Genetic variants : HAPMAP5680
Genomic Variants (DGV)PSG11 [DGVbeta]
DECIPHERPSG11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSG11 
Mutations
ICGC Data PortalPSG11 
TCGA Data PortalPSG11 
Broad Tumor PortalPSG11
OASIS PortalPSG11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSG11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSG11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSG11
DgiDB (Drug Gene Interaction Database)PSG11
DoCM (Curated mutations)PSG11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSG11 (select a term)
intoGenPSG11
Cancer3DPSG11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176401   
Orphanet
MedgenPSG11
Genetic Testing Registry PSG11
NextProtQ9UQ72 [Medical]
TSGene5680
GENETestsPSG11
Target ValidationPSG11
Huge Navigator PSG11 [HugePedia]
snp3D : Map Gene to Disease5680
BioCentury BCIQPSG11
ClinGenPSG11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5680
Chemical/Pharm GKB GenePA164742300
Clinical trialPSG11
Miscellaneous
canSAR (ICR)PSG11 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSG11
EVEXPSG11
GoPubMedPSG11
iHOPPSG11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:23:57 CET 2017

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