Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PSG2 (pregnancy specific beta-1-glycoprotein 2)

Identity

Alias_namesPSBG2
Alias_symbol (synonym)PSGGB
PSG1
CEA
Other alias
HGNC (Hugo) PSG2
LocusID (NCBI) 5670
Atlas_Id 43941
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43064210 and ends at 43082741 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSG2   9519
Cards
Entrez_Gene (NCBI)PSG2  5670  pregnancy specific beta-1-glycoprotein 2
AliasesCEA; PSBG2; PSG1
GeneCards (Weizmann)PSG2
Ensembl hg19 (Hinxton)ENSG00000242221 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242221 [Gene_View]  chr19:43064210-43082741 [Contig_View]  PSG2 [Vega]
ICGC DataPortalENSG00000242221
TCGA cBioPortalPSG2
AceView (NCBI)PSG2
Genatlas (Paris)PSG2
WikiGenes5670
SOURCE (Princeton)PSG2
Genetics Home Reference (NIH)PSG2
Genomic and cartography
GoldenPath hg38 (UCSC)PSG2  -     chr19:43064210-43082741 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSG2  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblPSG2 - 19q13.31 [CytoView hg19]  PSG2 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIPSG2 [Mapview hg19]  PSG2 [Mapview hg38]
OMIM176391   
Gene and transcription
Genbank (Entrez)AK002132 BC022316 DQ891359 EU832659 EU832736
RefSeq transcript (Entrez)NM_031246
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSG2
Cluster EST : UnigeneHs.709200 [ NCBI ]
CGAP (NCI)Hs.709200
Alternative Splicing GalleryENSG00000242221
Gene ExpressionPSG2 [ NCBI-GEO ]   PSG2 [ EBI - ARRAY_EXPRESS ]   PSG2 [ SEEK ]   PSG2 [ MEM ]
Gene Expression Viewer (FireBrowse)PSG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5670
GTEX Portal (Tissue expression)PSG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11465   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP11465  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP11465
Splice isoforms : SwissVarP11465
PhosPhoSitePlusP11465
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)PSG2
DMDM Disease mutations5670
Blocks (Seattle)PSG2
SuperfamilyP11465
Human Protein AtlasENSG00000242221
Peptide AtlasP11465
HPRD08891
IPIIPI00005694   IPI00893392   
Protein Interaction databases
DIP (DOE-UCLA)P11465
IntAct (EBI)P11465
FunCoupENSG00000242221
BioGRIDPSG2
STRING (EMBL)PSG2
ZODIACPSG2
Ontologies - Pathways
QuickGOP11465
Ontology : AmiGOmolecular_function  cellular_component  extracellular region  female pregnancy  cell migration  
Ontology : EGO-EBImolecular_function  cellular_component  extracellular region  female pregnancy  cell migration  
NDEx NetworkPSG2
Atlas of Cancer Signalling NetworkPSG2
Wikipedia pathwaysPSG2
Orthology - Evolution
OrthoDB5670
GeneTree (enSembl)ENSG00000242221
Phylogenetic Trees/Animal Genes : TreeFamPSG2
HOVERGENP11465
HOGENOMP11465
Homologs : HomoloGenePSG2
Homology/Alignments : Family Browser (UCSC)PSG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSG2
dbVarPSG2
ClinVarPSG2
1000_GenomesPSG2 
Exome Variant ServerPSG2
ExAC (Exome Aggregation Consortium)PSG2 (select the gene name)
Genetic variants : HAPMAP5670
Genomic Variants (DGV)PSG2 [DGVbeta]
DECIPHERPSG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSG2 
Mutations
ICGC Data PortalPSG2 
TCGA Data PortalPSG2 
Broad Tumor PortalPSG2
OASIS PortalPSG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSG2
DgiDB (Drug Gene Interaction Database)PSG2
DoCM (Curated mutations)PSG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSG2 (select a term)
intoGenPSG2
Cancer3DPSG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176391   
Orphanet
MedgenPSG2
Genetic Testing Registry PSG2
NextProtP11465 [Medical]
TSGene5670
GENETestsPSG2
Target ValidationPSG2
Huge Navigator PSG2 [HugePedia]
snp3D : Map Gene to Disease5670
BioCentury BCIQPSG2
ClinGenPSG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5670
Chemical/Pharm GKB GenePA33864
Clinical trialPSG2
Miscellaneous
canSAR (ICR)PSG2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSG2
EVEXPSG2
GoPubMedPSG2
iHOPPSG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:51:24 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.