Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PSG3 (pregnancy specific beta-1-glycoprotein 3)

Identity

Other alias-
HGNC (Hugo) PSG3
LocusID (NCBI) 5671
Atlas_Id 72331
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 42721642 and ends at 42740516 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDYL (6p25.1) / PSG3 (19q13.2)CROCC (1p36.13) / PSG3 (19q13.2)FNDC3A (13q14.2) / PSG3 (19q13.2)
GLYCTK (3p21.1) / PSG3 (19q13.2)PAPPA (9q33.1) / PSG3 (19q13.2)PSG3 (19q13.2) / PSG6 (19q13.31)
PTPRM (18p11.23) / PSG3 (19q13.2)TNKS1BP1 (11q12.1) / PSG3 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSG3   9520
Cards
Entrez_Gene (NCBI)PSG3  5671  pregnancy specific beta-1-glycoprotein 3
Aliases
GeneCards (Weizmann)PSG3
Ensembl hg19 (Hinxton)ENSG00000221826 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221826 [Gene_View]  chr19:42721642-42740516 [Contig_View]  PSG3 [Vega]
ICGC DataPortalENSG00000221826
TCGA cBioPortalPSG3
AceView (NCBI)PSG3
Genatlas (Paris)PSG3
WikiGenes5671
SOURCE (Princeton)PSG3
Genetics Home Reference (NIH)PSG3
Genomic and cartography
GoldenPath hg38 (UCSC)PSG3  -     chr19:42721642-42740516 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSG3  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblPSG3 - 19q13.2 [CytoView hg19]  PSG3 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIPSG3 [Mapview hg19]  PSG3 [Mapview hg38]
OMIM176392   
Gene and transcription
Genbank (Entrez)BC005924 BG620196 DA833589 DQ896462 EU176443
RefSeq transcript (Entrez)NM_021016
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSG3
Cluster EST : UnigeneHs.654413 [ NCBI ]
CGAP (NCI)Hs.654413
Alternative Splicing GalleryENSG00000221826
Gene ExpressionPSG3 [ NCBI-GEO ]   PSG3 [ EBI - ARRAY_EXPRESS ]   PSG3 [ SEEK ]   PSG3 [ MEM ]
Gene Expression Viewer (FireBrowse)PSG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5671
GTEX Portal (Tissue expression)PSG3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16557   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16557  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16557
Splice isoforms : SwissVarQ16557
PhosPhoSitePlusQ16557
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)PSG3
DMDM Disease mutations5671
Blocks (Seattle)PSG3
SuperfamilyQ16557
Human Protein AtlasENSG00000221826
Peptide AtlasQ16557
HPRD08892
IPIIPI00332814   IPI00002903   
Protein Interaction databases
DIP (DOE-UCLA)Q16557
IntAct (EBI)Q16557
FunCoupENSG00000221826
BioGRIDPSG3
STRING (EMBL)PSG3
ZODIACPSG3
Ontologies - Pathways
QuickGOQ16557
Ontology : AmiGOextracellular region  defense response  female pregnancy  
Ontology : EGO-EBIextracellular region  defense response  female pregnancy  
NDEx NetworkPSG3
Atlas of Cancer Signalling NetworkPSG3
Wikipedia pathwaysPSG3
Orthology - Evolution
OrthoDB5671
GeneTree (enSembl)ENSG00000221826
Phylogenetic Trees/Animal Genes : TreeFamPSG3
HOVERGENQ16557
HOGENOMQ16557
Homologs : HomoloGenePSG3
Homology/Alignments : Family Browser (UCSC)PSG3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSG3
dbVarPSG3
ClinVarPSG3
1000_GenomesPSG3 
Exome Variant ServerPSG3
ExAC (Exome Aggregation Consortium)PSG3 (select the gene name)
Genetic variants : HAPMAP5671
Genomic Variants (DGV)PSG3 [DGVbeta]
DECIPHERPSG3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSG3 
Mutations
ICGC Data PortalPSG3 
TCGA Data PortalPSG3 
Broad Tumor PortalPSG3
OASIS PortalPSG3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSG3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSG3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSG3
DgiDB (Drug Gene Interaction Database)PSG3
DoCM (Curated mutations)PSG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSG3 (select a term)
intoGenPSG3
Cancer3DPSG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176392   
Orphanet
MedgenPSG3
Genetic Testing Registry PSG3
NextProtQ16557 [Medical]
TSGene5671
GENETestsPSG3
Target ValidationPSG3
Huge Navigator PSG3 [HugePedia]
snp3D : Map Gene to Disease5671
BioCentury BCIQPSG3
ClinGenPSG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5671
Chemical/Pharm GKB GenePA33865
Clinical trialPSG3
Miscellaneous
canSAR (ICR)PSG3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSG3
EVEXPSG3
GoPubMedPSG3
iHOPPSG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:37:44 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.