Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PSG4 (pregnancy specific beta-1-glycoprotein 4)

Identity

Other aliasPSBG-4
PSBG-9
PSG9
HGNC (Hugo) PSG4
LocusID (NCBI) 5672
Atlas_Id 72332
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43192702 and ends at 43205774 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSG4   9521
Cards
Entrez_Gene (NCBI)PSG4  5672  pregnancy specific beta-1-glycoprotein 4
AliasesPSBG-4; PSBG-9; PSG9
GeneCards (Weizmann)PSG4
Ensembl hg19 (Hinxton)ENSG00000243137 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243137 [Gene_View]  chr19:43192702-43205774 [Contig_View]  PSG4 [Vega]
ICGC DataPortalENSG00000243137
TCGA cBioPortalPSG4
AceView (NCBI)PSG4
Genatlas (Paris)PSG4
WikiGenes5672
SOURCE (Princeton)PSG4
Genetics Home Reference (NIH)PSG4
Genomic and cartography
GoldenPath hg38 (UCSC)PSG4  -     chr19:43192702-43205774 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSG4  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblPSG4 - 19q13.31 [CytoView hg19]  PSG4 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIPSG4 [Mapview hg19]  PSG4 [Mapview hg38]
OMIM176393   
Gene and transcription
Genbank (Entrez)AF289606 AK075149 BC008405 BC013431 BC035419
RefSeq transcript (Entrez)NM_001276495 NM_001316339 NM_002780 NM_213633
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSG4
Cluster EST : UnigeneHs.711363 [ NCBI ]
CGAP (NCI)Hs.711363
Alternative Splicing GalleryENSG00000243137
Gene ExpressionPSG4 [ NCBI-GEO ]   PSG4 [ EBI - ARRAY_EXPRESS ]   PSG4 [ SEEK ]   PSG4 [ MEM ]
Gene Expression Viewer (FireBrowse)PSG4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5672
GTEX Portal (Tissue expression)PSG4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ00888   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ00888  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ00888
Splice isoforms : SwissVarQ00888
PhosPhoSitePlusQ00888
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)PSG4
DMDM Disease mutations5672
Blocks (Seattle)PSG4
SuperfamilyQ00888
Human Protein AtlasENSG00000243137
Peptide AtlasQ00888
HPRD08893
IPIIPI00477046   IPI00414259   IPI00640684   IPI00894522   
Protein Interaction databases
DIP (DOE-UCLA)Q00888
IntAct (EBI)Q00888
FunCoupENSG00000243137
BioGRIDPSG4
STRING (EMBL)PSG4
ZODIACPSG4
Ontologies - Pathways
QuickGOQ00888
Ontology : AmiGOfemale pregnancy  extracellular exosome  
Ontology : EGO-EBIfemale pregnancy  extracellular exosome  
NDEx NetworkPSG4
Atlas of Cancer Signalling NetworkPSG4
Wikipedia pathwaysPSG4
Orthology - Evolution
OrthoDB5672
GeneTree (enSembl)ENSG00000243137
Phylogenetic Trees/Animal Genes : TreeFamPSG4
HOVERGENQ00888
HOGENOMQ00888
Homologs : HomoloGenePSG4
Homology/Alignments : Family Browser (UCSC)PSG4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSG4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSG4
dbVarPSG4
ClinVarPSG4
1000_GenomesPSG4 
Exome Variant ServerPSG4
ExAC (Exome Aggregation Consortium)PSG4 (select the gene name)
Genetic variants : HAPMAP5672
Genomic Variants (DGV)PSG4 [DGVbeta]
DECIPHERPSG4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSG4 
Mutations
ICGC Data PortalPSG4 
TCGA Data PortalPSG4 
Broad Tumor PortalPSG4
OASIS PortalPSG4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSG4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSG4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSG4
DgiDB (Drug Gene Interaction Database)PSG4
DoCM (Curated mutations)PSG4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSG4 (select a term)
intoGenPSG4
Cancer3DPSG4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176393   
Orphanet
MedgenPSG4
Genetic Testing Registry PSG4
NextProtQ00888 [Medical]
TSGene5672
GENETestsPSG4
Target ValidationPSG4
Huge Navigator PSG4 [HugePedia]
snp3D : Map Gene to Disease5672
BioCentury BCIQPSG4
ClinGenPSG4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5672
Chemical/Pharm GKB GenePA33866
Clinical trialPSG4
Miscellaneous
canSAR (ICR)PSG4 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSG4
EVEXPSG4
GoPubMedPSG4
iHOPPSG4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:44 CEST 2017

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