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PSG5 (pregnancy specific beta-1-glycoprotein 5)

Identity

Alias_symbol (synonym)FL-NCA-3
PSG
Other alias
HGNC (Hugo) PSG5
LocusID (NCBI) 5673
Atlas_Id 72333
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43167743 and ends at 43186536 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSG5   9522
Cards
Entrez_Gene (NCBI)PSG5  5673  pregnancy specific beta-1-glycoprotein 5
AliasesFL-NCA-3; PSG
GeneCards (Weizmann)PSG5
Ensembl hg19 (Hinxton)ENSG00000204941 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204941 [Gene_View]  chr19:43167743-43186536 [Contig_View]  PSG5 [Vega]
ICGC DataPortalENSG00000204941
TCGA cBioPortalPSG5
AceView (NCBI)PSG5
Genatlas (Paris)PSG5
WikiGenes5673
SOURCE (Princeton)PSG5
Genetics Home Reference (NIH)PSG5
Genomic and cartography
GoldenPath hg38 (UCSC)PSG5  -     chr19:43167743-43186536 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSG5  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblPSG5 - 19q13.31 [CytoView hg19]  PSG5 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIPSG5 [Mapview hg19]  PSG5 [Mapview hg38]
OMIM176394   
Gene and transcription
Genbank (Entrez)AA151017 BC012607 BG621332 BG622527 DA835167
RefSeq transcript (Entrez)NM_001130014 NM_002781
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSG5
Cluster EST : UnigeneHs.654415 [ NCBI ]
CGAP (NCI)Hs.654415
Alternative Splicing GalleryENSG00000204941
Gene ExpressionPSG5 [ NCBI-GEO ]   PSG5 [ EBI - ARRAY_EXPRESS ]   PSG5 [ SEEK ]   PSG5 [ MEM ]
Gene Expression Viewer (FireBrowse)PSG5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5673
GTEX Portal (Tissue expression)PSG5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15238   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15238  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15238
Splice isoforms : SwissVarQ15238
PhosPhoSitePlusQ15238
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)PSG5
DMDM Disease mutations5673
Blocks (Seattle)PSG5
SuperfamilyQ15238
Human Protein AtlasENSG00000204941
Peptide AtlasQ15238
HPRD08894
IPIIPI00300046   IPI00893298   IPI00893420   IPI00893034   
Protein Interaction databases
DIP (DOE-UCLA)Q15238
IntAct (EBI)Q15238
FunCoupENSG00000204941
BioGRIDPSG5
STRING (EMBL)PSG5
ZODIACPSG5
Ontologies - Pathways
QuickGOQ15238
Ontology : AmiGOprotein binding  extracellular region  female pregnancy  
Ontology : EGO-EBIprotein binding  extracellular region  female pregnancy  
NDEx NetworkPSG5
Atlas of Cancer Signalling NetworkPSG5
Wikipedia pathwaysPSG5
Orthology - Evolution
OrthoDB5673
GeneTree (enSembl)ENSG00000204941
Phylogenetic Trees/Animal Genes : TreeFamPSG5
HOVERGENQ15238
HOGENOMQ15238
Homologs : HomoloGenePSG5
Homology/Alignments : Family Browser (UCSC)PSG5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSG5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSG5
dbVarPSG5
ClinVarPSG5
1000_GenomesPSG5 
Exome Variant ServerPSG5
ExAC (Exome Aggregation Consortium)PSG5 (select the gene name)
Genetic variants : HAPMAP5673
Genomic Variants (DGV)PSG5 [DGVbeta]
DECIPHERPSG5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSG5 
Mutations
ICGC Data PortalPSG5 
TCGA Data PortalPSG5 
Broad Tumor PortalPSG5
OASIS PortalPSG5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSG5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSG5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSG5
DgiDB (Drug Gene Interaction Database)PSG5
DoCM (Curated mutations)PSG5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSG5 (select a term)
intoGenPSG5
Cancer3DPSG5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176394   
Orphanet
MedgenPSG5
Genetic Testing Registry PSG5
NextProtQ15238 [Medical]
TSGene5673
GENETestsPSG5
Target ValidationPSG5
Huge Navigator PSG5 [HugePedia]
snp3D : Map Gene to Disease5673
BioCentury BCIQPSG5
ClinGenPSG5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5673
Chemical/Pharm GKB GenePA33867
Clinical trialPSG5
Miscellaneous
canSAR (ICR)PSG5 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSG5
EVEXPSG5
GoPubMedPSG5
iHOPPSG5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:45 CEST 2017

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