Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PSG6 (pregnancy specific beta-1-glycoprotein 6)

Identity

Other aliasPSBG-10
PSBG-12
PSBG-6
PSG10
PSGGB
HGNC (Hugo) PSG6
LocusID (NCBI) 5675
Atlas_Id 72334
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 42902082 and ends at 42917924 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PSG3 (19q13.2) / PSG6 (19q13.31)PSG6 (19q13.31) / ADAR (1q21.3)ZNF124 (1q44) / PSG6 (19q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSG6   9523
Cards
Entrez_Gene (NCBI)PSG6  5675  pregnancy specific beta-1-glycoprotein 6
AliasesPSBG-10; PSBG-12; PSBG-6; PSG10; 
PSGGB
GeneCards (Weizmann)PSG6
Ensembl hg19 (Hinxton)ENSG00000170848 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170848 [Gene_View]  chr19:42902082-42917924 [Contig_View]  PSG6 [Vega]
ICGC DataPortalENSG00000170848
TCGA cBioPortalPSG6
AceView (NCBI)PSG6
Genatlas (Paris)PSG6
WikiGenes5675
SOURCE (Princeton)PSG6
Genetics Home Reference (NIH)PSG6
Genomic and cartography
GoldenPath hg38 (UCSC)PSG6  -     chr19:42902082-42917924 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSG6  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblPSG6 - 19q13.31 [CytoView hg19]  PSG6 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIPSG6 [Mapview hg19]  PSG6 [Mapview hg38]
OMIM176395   
Gene and transcription
Genbank (Entrez)AI148792 BC020652 DA833634 DQ893114 DQ896388
RefSeq transcript (Entrez)NM_001031850 NM_002782
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSG6
Cluster EST : UnigeneHs.646353 [ NCBI ]
CGAP (NCI)Hs.646353
Alternative Splicing GalleryENSG00000170848
Gene ExpressionPSG6 [ NCBI-GEO ]   PSG6 [ EBI - ARRAY_EXPRESS ]   PSG6 [ SEEK ]   PSG6 [ MEM ]
Gene Expression Viewer (FireBrowse)PSG6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5675
GTEX Portal (Tissue expression)PSG6
Human Protein AtlasENSG00000170848-PSG6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ00889   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ00889  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ00889
Splice isoforms : SwissVarQ00889
PhosPhoSitePlusQ00889
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)PSG6
DMDM Disease mutations5675
Blocks (Seattle)PSG6
SuperfamilyQ00889
Human Protein Atlas [tissue]ENSG00000170848-PSG6 [tissue]
Peptide AtlasQ00889
HPRD08895
IPIIPI00025098   IPI00015655   IPI00930513   IPI00879998   IPI00879164   
Protein Interaction databases
DIP (DOE-UCLA)Q00889
IntAct (EBI)Q00889
FunCoupENSG00000170848
BioGRIDPSG6
STRING (EMBL)PSG6
ZODIACPSG6
Ontologies - Pathways
QuickGOQ00889
Ontology : AmiGOmolecular_function  extracellular region  female pregnancy  
Ontology : EGO-EBImolecular_function  extracellular region  female pregnancy  
NDEx NetworkPSG6
Atlas of Cancer Signalling NetworkPSG6
Wikipedia pathwaysPSG6
Orthology - Evolution
OrthoDB5675
GeneTree (enSembl)ENSG00000170848
Phylogenetic Trees/Animal Genes : TreeFamPSG6
HOVERGENQ00889
HOGENOMQ00889
Homologs : HomoloGenePSG6
Homology/Alignments : Family Browser (UCSC)PSG6
Gene fusions - Rearrangements
Tumor Fusion PortalPSG6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSG6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSG6
dbVarPSG6
ClinVarPSG6
1000_GenomesPSG6 
Exome Variant ServerPSG6
ExAC (Exome Aggregation Consortium)ENSG00000170848
GNOMAD BrowserENSG00000170848
Genetic variants : HAPMAP5675
Genomic Variants (DGV)PSG6 [DGVbeta]
DECIPHERPSG6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSG6 
Mutations
ICGC Data PortalPSG6 
TCGA Data PortalPSG6 
Broad Tumor PortalPSG6
OASIS PortalPSG6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSG6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSG6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSG6
DgiDB (Drug Gene Interaction Database)PSG6
DoCM (Curated mutations)PSG6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSG6 (select a term)
intoGenPSG6
Cancer3DPSG6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176395   
Orphanet
DisGeNETPSG6
MedgenPSG6
Genetic Testing Registry PSG6
NextProtQ00889 [Medical]
TSGene5675
GENETestsPSG6
Target ValidationPSG6
Huge Navigator PSG6 [HugePedia]
snp3D : Map Gene to Disease5675
BioCentury BCIQPSG6
ClinGenPSG6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5675
Chemical/Pharm GKB GenePA33868
Clinical trialPSG6
Miscellaneous
canSAR (ICR)PSG6 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSG6
EVEXPSG6
GoPubMedPSG6
iHOPPSG6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:39:43 CET 2017

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