Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PSG7 (pregnancy specific beta-1-glycoprotein 7 (gene/pseudogene))

Identity

Alias_namespregnancy specific beta-1-glycoprotein 7
Other aliasPSBG-7
PSG1
PSGGA
HGNC (Hugo) PSG7
LocusID (NCBI) 5676
Atlas_Id 72335
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 42924132 and ends at 42937178 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSG7   9524
Cards
Entrez_Gene (NCBI)PSG7  5676  pregnancy specific beta-1-glycoprotein 7 (gene/pseudogene)
AliasesPSBG-7; PSG1; PSGGA
GeneCards (Weizmann)PSG7
Ensembl hg19 (Hinxton)ENSG00000221878 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221878 [Gene_View]  chr19:42924132-42937178 [Contig_View]  PSG7 [Vega]
ICGC DataPortalENSG00000221878
TCGA cBioPortalPSG7
AceView (NCBI)PSG7
Genatlas (Paris)PSG7
WikiGenes5676
SOURCE (Princeton)PSG7
Genetics Home Reference (NIH)PSG7
Genomic and cartography
GoldenPath hg38 (UCSC)PSG7  -     chr19:42924132-42937178 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSG7  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblPSG7 - 19q13.31 [CytoView hg19]  PSG7 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIPSG7 [Mapview hg19]  PSG7 [Mapview hg38]
OMIM176396   
Gene and transcription
Genbank (Entrez)AK309898 AL546656 BC030979 BC136401 BG434892
RefSeq transcript (Entrez)NM_001206650 NM_001290042 NM_002783
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSG7
Cluster EST : UnigeneHs.709203 [ NCBI ]
CGAP (NCI)Hs.709203
Alternative Splicing GalleryENSG00000221878
Gene ExpressionPSG7 [ NCBI-GEO ]   PSG7 [ EBI - ARRAY_EXPRESS ]   PSG7 [ SEEK ]   PSG7 [ MEM ]
Gene Expression Viewer (FireBrowse)PSG7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5676
GTEX Portal (Tissue expression)PSG7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13046   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13046  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13046
Splice isoforms : SwissVarQ13046
PhosPhoSitePlusQ13046
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)PSG7
DMDM Disease mutations5676
Blocks (Seattle)PSG7
SuperfamilyQ13046
Human Protein AtlasENSG00000221878
Peptide AtlasQ13046
HPRD08896
IPIIPI00011489   IPI00718835   IPI01018000   
Protein Interaction databases
DIP (DOE-UCLA)Q13046
IntAct (EBI)Q13046
FunCoupENSG00000221878
BioGRIDPSG7
STRING (EMBL)PSG7
ZODIACPSG7
Ontologies - Pathways
QuickGOQ13046
Ontology : AmiGOextracellular region  female pregnancy  
Ontology : EGO-EBIextracellular region  female pregnancy  
NDEx NetworkPSG7
Atlas of Cancer Signalling NetworkPSG7
Wikipedia pathwaysPSG7
Orthology - Evolution
OrthoDB5676
GeneTree (enSembl)ENSG00000221878
Phylogenetic Trees/Animal Genes : TreeFamPSG7
HOVERGENQ13046
HOGENOMQ13046
Homologs : HomoloGenePSG7
Homology/Alignments : Family Browser (UCSC)PSG7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSG7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSG7
dbVarPSG7
ClinVarPSG7
1000_GenomesPSG7 
Exome Variant ServerPSG7
ExAC (Exome Aggregation Consortium)PSG7 (select the gene name)
Genetic variants : HAPMAP5676
Genomic Variants (DGV)PSG7 [DGVbeta]
DECIPHERPSG7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSG7 
Mutations
ICGC Data PortalPSG7 
TCGA Data PortalPSG7 
Broad Tumor PortalPSG7
OASIS PortalPSG7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPSG7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSG7
DgiDB (Drug Gene Interaction Database)PSG7
DoCM (Curated mutations)PSG7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSG7 (select a term)
intoGenPSG7
Cancer3DPSG7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176396   
Orphanet
MedgenPSG7
Genetic Testing Registry PSG7
NextProtQ13046 [Medical]
TSGene5676
GENETestsPSG7
Target ValidationPSG7
Huge Navigator PSG7 [HugePedia]
snp3D : Map Gene to Disease5676
BioCentury BCIQPSG7
ClinGenPSG7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5676
Chemical/Pharm GKB GenePA33869
Clinical trialPSG7
Miscellaneous
canSAR (ICR)PSG7 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSG7
EVEXPSG7
GoPubMedPSG7
iHOPPSG7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:33 CEST 2017

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