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PSG8 (pregnancy specific beta-1-glycoprotein 8)

Identity

Other aliasPSG1
HGNC (Hugo) PSG8
LocusID (NCBI) 440533
Atlas_Id 72336
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 42752687 and ends at 42765679 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSG8   9525
Cards
Entrez_Gene (NCBI)PSG8  440533  pregnancy specific beta-1-glycoprotein 8
AliasesPSG1
GeneCards (Weizmann)PSG8
Ensembl hg19 (Hinxton)ENSG00000124467 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124467 [Gene_View]  chr19:42752687-42765679 [Contig_View]  PSG8 [Vega]
ICGC DataPortalENSG00000124467
TCGA cBioPortalPSG8
AceView (NCBI)PSG8
Genatlas (Paris)PSG8
WikiGenes440533
SOURCE (Princeton)PSG8
Genetics Home Reference (NIH)PSG8
Genomic and cartography
GoldenPath hg38 (UCSC)PSG8  -     chr19:42752687-42765679 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSG8  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblPSG8 - 19q13.2 [CytoView hg19]  PSG8 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIPSG8 [Mapview hg19]  PSG8 [Mapview hg38]
OMIM176397   
Gene and transcription
Genbank (Entrez)AK092458 AK300230 AL545004 BC137500 BC142628
RefSeq transcript (Entrez)NM_001130167 NM_001130168 NM_182707
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSG8
Cluster EST : UnigeneHs.466843 [ NCBI ]
CGAP (NCI)Hs.466843
Alternative Splicing GalleryENSG00000124467
Gene ExpressionPSG8 [ NCBI-GEO ]   PSG8 [ EBI - ARRAY_EXPRESS ]   PSG8 [ SEEK ]   PSG8 [ MEM ]
Gene Expression Viewer (FireBrowse)PSG8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440533
GTEX Portal (Tissue expression)PSG8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UQ74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UQ74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UQ74
Splice isoforms : SwissVarQ9UQ74
PhosPhoSitePlusQ9UQ74
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)PSG8
DMDM Disease mutations440533
Blocks (Seattle)PSG8
SuperfamilyQ9UQ74
Human Protein AtlasENSG00000124467
Peptide AtlasQ9UQ74
HPRD15939
IPIIPI00334256   IPI00877916   IPI00908809   IPI00930527   IPI00300593   IPI00014809   IPI00880142   IPI00921461   
Protein Interaction databases
DIP (DOE-UCLA)Q9UQ74
IntAct (EBI)Q9UQ74
FunCoupENSG00000124467
BioGRIDPSG8
STRING (EMBL)PSG8
ZODIACPSG8
Ontologies - Pathways
QuickGOQ9UQ74
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkPSG8
Atlas of Cancer Signalling NetworkPSG8
Wikipedia pathwaysPSG8
Orthology - Evolution
OrthoDB440533
GeneTree (enSembl)ENSG00000124467
Phylogenetic Trees/Animal Genes : TreeFamPSG8
HOVERGENQ9UQ74
HOGENOMQ9UQ74
Homologs : HomoloGenePSG8
Homology/Alignments : Family Browser (UCSC)PSG8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSG8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSG8
dbVarPSG8
ClinVarPSG8
1000_GenomesPSG8 
Exome Variant ServerPSG8
ExAC (Exome Aggregation Consortium)PSG8 (select the gene name)
Genetic variants : HAPMAP440533
Genomic Variants (DGV)PSG8 [DGVbeta]
DECIPHERPSG8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSG8 
Mutations
ICGC Data PortalPSG8 
TCGA Data PortalPSG8 
Broad Tumor PortalPSG8
OASIS PortalPSG8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSG8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSG8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSG8
DgiDB (Drug Gene Interaction Database)PSG8
DoCM (Curated mutations)PSG8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSG8 (select a term)
intoGenPSG8
Cancer3DPSG8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176397   
Orphanet
MedgenPSG8
Genetic Testing Registry PSG8
NextProtQ9UQ74 [Medical]
TSGene440533
GENETestsPSG8
Target ValidationPSG8
Huge Navigator PSG8 [HugePedia]
snp3D : Map Gene to Disease440533
BioCentury BCIQPSG8
ClinGenPSG8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440533
Chemical/Pharm GKB GenePA33870
Clinical trialPSG8
Miscellaneous
canSAR (ICR)PSG8 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSG8
EVEXPSG8
GoPubMedPSG8
iHOPPSG8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:33 CEST 2017

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