Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PSG9 (pregnancy specific beta-1-glycoprotein 9)

Identity

Alias_namesPSG11
Alias_symbol (synonym)PSGII
Other aliasPS34
PSBG-11
PSBG-9
HGNC (Hugo) PSG9
LocusID (NCBI) 5678
Atlas_Id 46011
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43757434 and ends at 43773715 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PSG9 (19q13.31) / NUDCD3 (7p13)PSG9 (19q13.31) / SCAMP2 (15q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSG9   9526
Cards
Entrez_Gene (NCBI)PSG9  5678  pregnancy specific beta-1-glycoprotein 9
AliasesPS34; PSBG-11; PSBG-9; PSG11; 
PSGII
GeneCards (Weizmann)PSG9
Ensembl hg19 (Hinxton)ENSG00000183668 [Gene_View]  chr19:43757434-43773715 [Contig_View]  PSG9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000183668 [Gene_View]  chr19:43757434-43773715 [Contig_View]  PSG9 [Vega]
ICGC DataPortalENSG00000183668
TCGA cBioPortalPSG9
AceView (NCBI)PSG9
Genatlas (Paris)PSG9
WikiGenes5678
SOURCE (Princeton)PSG9
Genetics Home Reference (NIH)PSG9
Genomic and cartography
GoldenPath hg19 (UCSC)PSG9  -     chr19:43757434-43773715 -  19q13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PSG9  -     19q13.31   [Description]    (hg38-Dec_2013)
EnsemblPSG9 - 19q13.31 [CytoView hg19]  PSG9 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIPSG9 [Mapview hg19]  PSG9 [Mapview hg38]
OMIM176398   
Gene and transcription
Genbank (Entrez)AK300187 AK300229 AK313256 BC005925 BC020759
RefSeq transcript (Entrez)NM_001301707 NM_001301708 NM_001301709 NM_002784
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)PSG9
Cluster EST : UnigeneHs.502092 [ NCBI ]
CGAP (NCI)Hs.502092
Alternative Splicing GalleryENSG00000183668
Gene ExpressionPSG9 [ NCBI-GEO ]   PSG9 [ EBI - ARRAY_EXPRESS ]   PSG9 [ SEEK ]   PSG9 [ MEM ]
Gene Expression Viewer (FireBrowse)PSG9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5678
GTEX Portal (Tissue expression)PSG9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ00887   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ00887  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ00887
Splice isoforms : SwissVarQ00887
PhosPhoSitePlusQ00887
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)PSG9
DMDM Disease mutations5678
Blocks (Seattle)PSG9
SuperfamilyQ00887
Human Protein AtlasENSG00000183668
Peptide AtlasQ00887
HPRD08897
IPIIPI00293461   IPI00647665   IPI00892991   IPI00896505   IPI00003199   IPI00013685   
Protein Interaction databases
DIP (DOE-UCLA)Q00887
IntAct (EBI)Q00887
FunCoupENSG00000183668
BioGRIDPSG9
STRING (EMBL)PSG9
ZODIACPSG9
Ontologies - Pathways
QuickGOQ00887
Ontology : AmiGOextracellular region  female pregnancy  
Ontology : EGO-EBIextracellular region  female pregnancy  
NDEx NetworkPSG9
Atlas of Cancer Signalling NetworkPSG9
Wikipedia pathwaysPSG9
Orthology - Evolution
OrthoDB5678
GeneTree (enSembl)ENSG00000183668
Phylogenetic Trees/Animal Genes : TreeFamPSG9
HOVERGENQ00887
HOGENOMQ00887
Homologs : HomoloGenePSG9
Homology/Alignments : Family Browser (UCSC)PSG9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSG9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSG9
dbVarPSG9
ClinVarPSG9
1000_GenomesPSG9 
Exome Variant ServerPSG9
ExAC (Exome Aggregation Consortium)PSG9 (select the gene name)
Genetic variants : HAPMAP5678
Genomic Variants (DGV)PSG9 [DGVbeta]
DECIPHER (Syndromes)19:43757434-43773715  ENSG00000183668
CONAN: Copy Number AnalysisPSG9 
Mutations
ICGC Data PortalPSG9 
TCGA Data PortalPSG9 
Broad Tumor PortalPSG9
OASIS PortalPSG9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSG9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSG9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSG9
DgiDB (Drug Gene Interaction Database)PSG9
DoCM (Curated mutations)PSG9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSG9 (select a term)
intoGenPSG9
Cancer3DPSG9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176398   
Orphanet
MedgenPSG9
Genetic Testing Registry PSG9
NextProtQ00887 [Medical]
TSGene5678
GENETestsPSG9
Huge Navigator PSG9 [HugePedia]
snp3D : Map Gene to Disease5678
BioCentury BCIQPSG9
ClinGenPSG9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5678
Chemical/Pharm GKB GenePA33871
Clinical trialPSG9
Miscellaneous
canSAR (ICR)PSG9 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSG9
EVEXPSG9
GoPubMedPSG9
iHOPPSG9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:15:56 CEST 2017

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