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PSKH1 (protein serine kinase H1)

Identity

Alias (NCBI)-
HGNC (Hugo) PSKH1
LocusID (NCBI) 5681
Atlas_Id 43436
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67893254 and ends at 67929676 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KPTN (19q13.32) / PSKH1 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PSKH1   9529
Cards
Entrez_Gene (NCBI)PSKH1    protein serine kinase H1
Aliases
GeneCards (Weizmann)PSKH1
Ensembl hg19 (Hinxton)ENSG00000159792 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159792 [Gene_View]  ENSG00000159792 [Sequence]  chr16:67893254-67929676 [Contig_View]  PSKH1 [Vega]
ICGC DataPortalENSG00000159792
TCGA cBioPortalPSKH1
AceView (NCBI)PSKH1
Genatlas (Paris)PSKH1
SOURCE (Princeton)PSKH1
Genetics Home Reference (NIH)PSKH1
Genomic and cartography
GoldenPath hg38 (UCSC)PSKH1  -     chr16:67893254-67929676 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSKH1  -     16q22.1   [Description]    (hg19-Feb_2009)
GoldenPathPSKH1 - 16q22.1 [CytoView hg19]  PSKH1 - 16q22.1 [CytoView hg38]
ImmunoBaseENSG00000159792
Genome Data Viewer NCBIPSKH1 [Mapview hg19]  
OMIM177015   
Gene and transcription
Genbank (Entrez)AJ272212 AK309272 BC021584 BC037560 BC062616
RefSeq transcript (Entrez)NM_006742
Consensus coding sequences : CCDS (NCBI)PSKH1
Gene ExpressionPSKH1 [ NCBI-GEO ]   PSKH1 [ EBI - ARRAY_EXPRESS ]   PSKH1 [ SEEK ]   PSKH1 [ MEM ]
Gene Expression Viewer (FireBrowse)PSKH1 [ Firebrowse - Broad ]
GenevisibleExpression of PSKH1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5681
GTEX Portal (Tissue expression)PSKH1
Human Protein AtlasENSG00000159792-PSKH1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11801   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP11801  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP11801
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusP11801
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom_sf    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)PSKH1
SuperfamilyP11801
AlphaFold pdb e-kbP11801   
Human Protein Atlas [tissue]ENSG00000159792-PSKH1 [tissue]
HPRD01511
Protein Interaction databases
DIP (DOE-UCLA)P11801
IntAct (EBI)P11801
BioGRIDPSKH1
STRING (EMBL)PSKH1
ZODIACPSKH1
Ontologies - Pathways
QuickGOP11801
Ontology : AmiGOprotein binding  ATP binding  endoplasmic reticulum membrane  Golgi apparatus  microtubule organizing center  cytosol  plasma membrane  protein phosphorylation  determination of left/right symmetry  heart development  nuclear speck  protein serine kinase activity  protein threonine kinase activity  
Ontology : EGO-EBIprotein binding  ATP binding  endoplasmic reticulum membrane  Golgi apparatus  microtubule organizing center  cytosol  plasma membrane  protein phosphorylation  determination of left/right symmetry  heart development  nuclear speck  protein serine kinase activity  protein threonine kinase activity  
NDEx NetworkPSKH1
Atlas of Cancer Signalling NetworkPSKH1
Wikipedia pathwaysPSKH1
Orthology - Evolution
OrthoDB5681
GeneTree (enSembl)ENSG00000159792
Phylogenetic Trees/Animal Genes : TreeFamPSKH1
Homologs : HomoloGenePSKH1
Homology/Alignments : Family Browser (UCSC)PSKH1
Gene fusions - Rearrangements
Fusion : QuiverPSKH1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSKH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSKH1
dbVarPSKH1
ClinVarPSKH1
MonarchPSKH1
1000_GenomesPSKH1 
Exome Variant ServerPSKH1
GNOMAD BrowserENSG00000159792
Varsome BrowserPSKH1
ACMGPSKH1 variants
VarityP11801
Genomic Variants (DGV)PSKH1 [DGVbeta]
DECIPHERPSKH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSKH1 
Mutations
ICGC Data PortalPSKH1 
TCGA Data PortalPSKH1 
Broad Tumor PortalPSKH1
OASIS PortalPSKH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSKH1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPSKH1
Mutations and Diseases : HGMDPSKH1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPSKH1
DgiDB (Drug Gene Interaction Database)PSKH1
DoCM (Curated mutations)PSKH1
CIViC (Clinical Interpretations of Variants in Cancer)PSKH1
Cancer3DPSKH1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM177015   
Orphanet
DisGeNETPSKH1
MedgenPSKH1
Genetic Testing Registry PSKH1
NextProtP11801 [Medical]
GENETestsPSKH1
Target ValidationPSKH1
Huge Navigator PSKH1 [HugePedia]
ClinGenPSKH1
Clinical trials, drugs, therapy
MyCancerGenomePSKH1
Protein Interactions : CTDPSKH1
Pharm GKB GenePA33874
PharosP11801
Clinical trialPSKH1
Miscellaneous
canSAR (ICR)PSKH1
HarmonizomePSKH1
DataMed IndexPSKH1
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPSKH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:27:09 CEST 2021

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