Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PSKH1 (protein serine kinase H1)

Identity

Other alias-
HGNC (Hugo) PSKH1
LocusID (NCBI) 5681
Atlas_Id 43436
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67927175 and ends at 67963581 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KPTN (19q13.32) / PSKH1 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSKH1   9529
Cards
Entrez_Gene (NCBI)PSKH1  5681  protein serine kinase H1
Aliases
GeneCards (Weizmann)PSKH1
Ensembl hg19 (Hinxton)ENSG00000159792 [Gene_View]  chr16:67927175-67963581 [Contig_View]  PSKH1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000159792 [Gene_View]  chr16:67927175-67963581 [Contig_View]  PSKH1 [Vega]
ICGC DataPortalENSG00000159792
TCGA cBioPortalPSKH1
AceView (NCBI)PSKH1
Genatlas (Paris)PSKH1
WikiGenes5681
SOURCE (Princeton)PSKH1
Genetics Home Reference (NIH)PSKH1
Genomic and cartography
GoldenPath hg19 (UCSC)PSKH1  -     chr16:67927175-67963581 +  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PSKH1  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblPSKH1 - 16q22.1 [CytoView hg19]  PSKH1 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIPSKH1 [Mapview hg19]  PSKH1 [Mapview hg38]
OMIM177015   
Gene and transcription
Genbank (Entrez)AJ272212 AK309272 BC021584 BC037560 BC062616
RefSeq transcript (Entrez)NM_006742
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)PSKH1
Cluster EST : UnigeneHs.513683 [ NCBI ]
CGAP (NCI)Hs.513683
Alternative Splicing GalleryENSG00000159792
Gene ExpressionPSKH1 [ NCBI-GEO ]   PSKH1 [ EBI - ARRAY_EXPRESS ]   PSKH1 [ SEEK ]   PSKH1 [ MEM ]
Gene Expression Viewer (FireBrowse)PSKH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5681
GTEX Portal (Tissue expression)PSKH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11801   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP11801  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP11801
Splice isoforms : SwissVarP11801
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
PhosPhoSitePlusP11801
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Ca/CaM-dep_Ca-dep_prot_Kinase    Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_dual-sp_kinase    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)PSKH1
DMDM Disease mutations5681
Blocks (Seattle)PSKH1
SuperfamilyP11801
Human Protein AtlasENSG00000159792
Peptide AtlasP11801
HPRD01511
IPIIPI00007810   
Protein Interaction databases
DIP (DOE-UCLA)P11801
IntAct (EBI)P11801
FunCoupENSG00000159792
BioGRIDPSKH1
STRING (EMBL)PSKH1
ZODIACPSKH1
Ontologies - Pathways
QuickGOP11801
Ontology : AmiGOprotein serine/threonine kinase activity  protein binding  ATP binding  cellular_component  endoplasmic reticulum membrane  Golgi apparatus  microtubule organizing center  plasma membrane  protein phosphorylation  determination of left/right symmetry  heart development  nuclear speck  
Ontology : EGO-EBIprotein serine/threonine kinase activity  protein binding  ATP binding  cellular_component  endoplasmic reticulum membrane  Golgi apparatus  microtubule organizing center  plasma membrane  protein phosphorylation  determination of left/right symmetry  heart development  nuclear speck  
NDEx NetworkPSKH1
Atlas of Cancer Signalling NetworkPSKH1
Wikipedia pathwaysPSKH1
Orthology - Evolution
OrthoDB5681
GeneTree (enSembl)ENSG00000159792
Phylogenetic Trees/Animal Genes : TreeFamPSKH1
HOVERGENP11801
HOGENOMP11801
Homologs : HomoloGenePSKH1
Homology/Alignments : Family Browser (UCSC)PSKH1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSKH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSKH1
dbVarPSKH1
ClinVarPSKH1
1000_GenomesPSKH1 
Exome Variant ServerPSKH1
ExAC (Exome Aggregation Consortium)PSKH1 (select the gene name)
Genetic variants : HAPMAP5681
Genomic Variants (DGV)PSKH1 [DGVbeta]
DECIPHER (Syndromes)16:67927175-67963581  ENSG00000159792
CONAN: Copy Number AnalysisPSKH1 
Mutations
ICGC Data PortalPSKH1 
TCGA Data PortalPSKH1 
Broad Tumor PortalPSKH1
OASIS PortalPSKH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSKH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSKH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSKH1
DgiDB (Drug Gene Interaction Database)PSKH1
DoCM (Curated mutations)PSKH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSKH1 (select a term)
intoGenPSKH1
Cancer3DPSKH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM177015   
Orphanet
MedgenPSKH1
Genetic Testing Registry PSKH1
NextProtP11801 [Medical]
TSGene5681
GENETestsPSKH1
Huge Navigator PSKH1 [HugePedia]
snp3D : Map Gene to Disease5681
BioCentury BCIQPSKH1
ClinGenPSKH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5681
Chemical/Pharm GKB GenePA33874
Clinical trialPSKH1
Miscellaneous
canSAR (ICR)PSKH1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSKH1
EVEXPSKH1
GoPubMedPSKH1
iHOPPSKH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:15:56 CEST 2017

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