Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PSKH2 (protein serine kinase H2)

Identity

Other alias-
HGNC (Hugo) PSKH2
LocusID (NCBI) 85481
Atlas_Id 43437
Location 8q21.3  [Link to chromosome band 8q21]
Location_base_pair Starts at 86047111 and ends at 86069697 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TRAPPC9 (8q24.3) / PSKH2 (8q21.3)TRAPPC9 8q24.3 / PSKH2 8q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSKH2   18997
Cards
Entrez_Gene (NCBI)PSKH2  85481  protein serine kinase H2
Aliases
GeneCards (Weizmann)PSKH2
Ensembl hg19 (Hinxton)ENSG00000147613 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147613 [Gene_View]  chr8:86047111-86069697 [Contig_View]  PSKH2 [Vega]
ICGC DataPortalENSG00000147613
TCGA cBioPortalPSKH2
AceView (NCBI)PSKH2
Genatlas (Paris)PSKH2
WikiGenes85481
SOURCE (Princeton)PSKH2
Genetics Home Reference (NIH)PSKH2
Genomic and cartography
GoldenPath hg38 (UCSC)PSKH2  -     chr8:86047111-86069697 -  8q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSKH2  -     8q21.3   [Description]    (hg19-Feb_2009)
EnsemblPSKH2 - 8q21.3 [CytoView hg19]  PSKH2 - 8q21.3 [CytoView hg38]
Mapping of homologs : NCBIPSKH2 [Mapview hg19]  PSKH2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW204502 AY037806 BC126180 BC126182 BC144195
RefSeq transcript (Entrez)NM_033126
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSKH2
Cluster EST : UnigeneHs.680136 [ NCBI ]
CGAP (NCI)Hs.680136
Alternative Splicing GalleryENSG00000147613
Gene ExpressionPSKH2 [ NCBI-GEO ]   PSKH2 [ EBI - ARRAY_EXPRESS ]   PSKH2 [ SEEK ]   PSKH2 [ MEM ]
Gene Expression Viewer (FireBrowse)PSKH2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85481
GTEX Portal (Tissue expression)PSKH2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QS6
Splice isoforms : SwissVarQ96QS6
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
PhosPhoSitePlusQ96QS6
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)   
Domains : Interpro (EBI)Ca/CaM-dep_Ca-dep_prot_Kinase    Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Conserved Domain (NCBI)PSKH2
DMDM Disease mutations85481
Blocks (Seattle)PSKH2
SuperfamilyQ96QS6
Human Protein AtlasENSG00000147613
Peptide AtlasQ96QS6
HPRD15192
IPIIPI00045068   
Protein Interaction databases
DIP (DOE-UCLA)Q96QS6
IntAct (EBI)Q96QS6
FunCoupENSG00000147613
BioGRIDPSKH2
STRING (EMBL)PSKH2
ZODIACPSKH2
Ontologies - Pathways
QuickGOQ96QS6
Ontology : AmiGOprotein serine/threonine kinase activity  ATP binding  intracellular  peptidyl-serine phosphorylation  peptidyl-threonine phosphorylation  intracellular signal transduction  
Ontology : EGO-EBIprotein serine/threonine kinase activity  ATP binding  intracellular  peptidyl-serine phosphorylation  peptidyl-threonine phosphorylation  intracellular signal transduction  
NDEx NetworkPSKH2
Atlas of Cancer Signalling NetworkPSKH2
Wikipedia pathwaysPSKH2
Orthology - Evolution
OrthoDB85481
GeneTree (enSembl)ENSG00000147613
Phylogenetic Trees/Animal Genes : TreeFamPSKH2
HOVERGENQ96QS6
HOGENOMQ96QS6
Homologs : HomoloGenePSKH2
Homology/Alignments : Family Browser (UCSC)PSKH2
Gene fusions - Rearrangements
Fusion : MitelmanTRAPPC9/PSKH2 [8q24.3/8q21.3]  [t(8;8)(q21;q24)]  
Fusion: TCGATRAPPC9 8q24.3 PSKH2 8q21.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSKH2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSKH2
dbVarPSKH2
ClinVarPSKH2
1000_GenomesPSKH2 
Exome Variant ServerPSKH2
ExAC (Exome Aggregation Consortium)PSKH2 (select the gene name)
Genetic variants : HAPMAP85481
Genomic Variants (DGV)PSKH2 [DGVbeta]
DECIPHERPSKH2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSKH2 
Mutations
ICGC Data PortalPSKH2 
TCGA Data PortalPSKH2 
Broad Tumor PortalPSKH2
OASIS PortalPSKH2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSKH2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSKH2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSKH2
DgiDB (Drug Gene Interaction Database)PSKH2
DoCM (Curated mutations)PSKH2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSKH2 (select a term)
intoGenPSKH2
Cancer3DPSKH2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPSKH2
Genetic Testing Registry PSKH2
NextProtQ96QS6 [Medical]
TSGene85481
GENETestsPSKH2
Target ValidationPSKH2
Huge Navigator PSKH2 [HugePedia]
snp3D : Map Gene to Disease85481
BioCentury BCIQPSKH2
ClinGenPSKH2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85481
Chemical/Pharm GKB GenePA134961168
Clinical trialPSKH2
Miscellaneous
canSAR (ICR)PSKH2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSKH2
EVEXPSKH2
GoPubMedPSKH2
iHOPPSKH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:11:52 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.