Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PSMC3IP (PSMC3 interacting protein)

Identity

Alias (NCBI)GT198
HOP2
HUMGT198A
ODG3
TBPIP
HGNC (Hugo) PSMC3IP
HGNC Alias symbTBPIP
GT198
HUMGT198A
Hop2
HGNC Alias nameTBP-1 interacting protein
 homologous-pairing protein 2 homolog
LocusID (NCBI) 29893
Atlas_Id 53699
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 42572310 and ends at 42577729 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PSMC3IP (17q21.2) / PSMC3IP (17q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PSMC3IP   17928
Cards
Entrez_Gene (NCBI)PSMC3IP    PSMC3 interacting protein
AliasesGT198; HOP2; HUMGT198A; ODG3; 
TBPIP
GeneCards (Weizmann)PSMC3IP
Ensembl hg19 (Hinxton)ENSG00000131470 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131470 [Gene_View]  ENSG00000131470 [Sequence]  chr17:42572310-42577729 [Contig_View]  PSMC3IP [Vega]
ICGC DataPortalENSG00000131470
TCGA cBioPortalPSMC3IP
AceView (NCBI)PSMC3IP
Genatlas (Paris)PSMC3IP
SOURCE (Princeton)PSMC3IP
Genetics Home Reference (NIH)PSMC3IP
Genomic and cartography
GoldenPath hg38 (UCSC)PSMC3IP  -     chr17:42572310-42577729 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSMC3IP  -     17q21.2   [Description]    (hg19-Feb_2009)
GoldenPathPSMC3IP - 17q21.2 [CytoView hg19]  PSMC3IP - 17q21.2 [CytoView hg38]
ImmunoBaseENSG00000131470
Genome Data Viewer NCBIPSMC3IP [Mapview hg19]  
OMIM608665   614324   
Gene and transcription
Genbank (Entrez)AB030304 AF440240 AK126369 BC008792 BI115923
RefSeq transcript (Entrez)NM_001256014 NM_001256015 NM_001256016 NM_013290 NM_016556
Consensus coding sequences : CCDS (NCBI)PSMC3IP
Gene ExpressionPSMC3IP [ NCBI-GEO ]   PSMC3IP [ EBI - ARRAY_EXPRESS ]   PSMC3IP [ SEEK ]   PSMC3IP [ MEM ]
Gene Expression Viewer (FireBrowse)PSMC3IP [ Firebrowse - Broad ]
GenevisibleExpression of PSMC3IP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29893
GTEX Portal (Tissue expression)PSMC3IP
Human Protein AtlasENSG00000131470-PSMC3IP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2W1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2W1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2W1
PhosPhoSitePlusQ9P2W1
Domains : Interpro (EBI)Hop2    Hop2_WH_dom    LZ3wCH    WH-like_DNA-bd_sf   
Domain families : Pfam (Sanger)LZ3wCH (PF18517)    TBPIP (PF07106)   
Domain families : Pfam (NCBI)pfam18517    pfam07106   
Conserved Domain (NCBI)PSMC3IP
SuperfamilyQ9P2W1
AlphaFold pdb e-kbQ9P2W1   
Human Protein Atlas [tissue]ENSG00000131470-PSMC3IP [tissue]
HPRD16362
Protein Interaction databases
DIP (DOE-UCLA)Q9P2W1
IntAct (EBI)Q9P2W1
BioGRIDPSMC3IP
STRING (EMBL)PSMC3IP
ZODIACPSMC3IP
Ontologies - Pathways
QuickGOQ9P2W1
Ontology : AmiGODNA binding  nucleoplasm  reciprocal meiotic recombination  nuclear receptor coactivator activity  positive regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  nucleoplasm  reciprocal meiotic recombination  nuclear receptor coactivator activity  positive regulation of transcription, DNA-templated  
NDEx NetworkPSMC3IP
Atlas of Cancer Signalling NetworkPSMC3IP
Wikipedia pathwaysPSMC3IP
Orthology - Evolution
OrthoDB29893
GeneTree (enSembl)ENSG00000131470
Phylogenetic Trees/Animal Genes : TreeFamPSMC3IP
Homologs : HomoloGenePSMC3IP
Homology/Alignments : Family Browser (UCSC)PSMC3IP
Gene fusions - Rearrangements
Fusion : QuiverPSMC3IP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSMC3IP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSMC3IP
dbVarPSMC3IP
ClinVarPSMC3IP
MonarchPSMC3IP
1000_GenomesPSMC3IP 
Exome Variant ServerPSMC3IP
GNOMAD BrowserENSG00000131470
Varsome BrowserPSMC3IP
ACMGPSMC3IP variants
VarityQ9P2W1
Genomic Variants (DGV)PSMC3IP [DGVbeta]
DECIPHERPSMC3IP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSMC3IP 
Mutations
ICGC Data PortalPSMC3IP 
TCGA Data PortalPSMC3IP 
Broad Tumor PortalPSMC3IP
OASIS PortalPSMC3IP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSMC3IP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPSMC3IP
Mutations and Diseases : HGMDPSMC3IP
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPSMC3IP
DgiDB (Drug Gene Interaction Database)PSMC3IP
DoCM (Curated mutations)PSMC3IP
CIViC (Clinical Interpretations of Variants in Cancer)PSMC3IP
Cancer3DPSMC3IP
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608665    614324   
Orphanet1011   
DisGeNETPSMC3IP
MedgenPSMC3IP
Genetic Testing Registry PSMC3IP
NextProtQ9P2W1 [Medical]
GENETestsPSMC3IP
Target ValidationPSMC3IP
Huge Navigator PSMC3IP [HugePedia]
ClinGenPSMC3IP
Clinical trials, drugs, therapy
MyCancerGenomePSMC3IP
Protein Interactions : CTDPSMC3IP
Pharm GKB GenePA143485584
PharosQ9P2W1
Clinical trialPSMC3IP
Miscellaneous
canSAR (ICR)PSMC3IP
HarmonizomePSMC3IP
DataMed IndexPSMC3IP
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPSMC3IP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:27:15 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.