Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PSMC3IP (PSMC3 interacting protein)

Identity

Alias_symbol (synonym)TBPIP
GT198
HUMGT198A
Hop2
Other aliasHOP2
ODG3
HGNC (Hugo) PSMC3IP
LocusID (NCBI) 29893
Atlas_Id 53699
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 40724328 and ends at 40729734 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PSMC3IP (17q21.2) / PSMC3IP (17q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSMC3IP   17928
Cards
Entrez_Gene (NCBI)PSMC3IP  29893  PSMC3 interacting protein
AliasesGT198; HOP2; HUMGT198A; ODG3; 
TBPIP
GeneCards (Weizmann)PSMC3IP
Ensembl hg19 (Hinxton)ENSG00000131470 [Gene_View]  chr17:40724328-40729734 [Contig_View]  PSMC3IP [Vega]
Ensembl hg38 (Hinxton)ENSG00000131470 [Gene_View]  chr17:40724328-40729734 [Contig_View]  PSMC3IP [Vega]
ICGC DataPortalENSG00000131470
TCGA cBioPortalPSMC3IP
AceView (NCBI)PSMC3IP
Genatlas (Paris)PSMC3IP
WikiGenes29893
SOURCE (Princeton)PSMC3IP
Genetics Home Reference (NIH)PSMC3IP
Genomic and cartography
GoldenPath hg19 (UCSC)PSMC3IP  -     chr17:40724328-40729734 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PSMC3IP  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblPSMC3IP - 17q21.2 [CytoView hg19]  PSMC3IP - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIPSMC3IP [Mapview hg19]  PSMC3IP [Mapview hg38]
OMIM608665   614324   
Gene and transcription
Genbank (Entrez)AB030304 AF440240 AK126369 BC008792 BI115923
RefSeq transcript (Entrez)NM_001256014 NM_001256015 NM_001256016 NM_013290 NM_016556
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_031960 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)PSMC3IP
Cluster EST : UnigeneHs.383019 [ NCBI ]
CGAP (NCI)Hs.383019
Alternative Splicing GalleryENSG00000131470
Gene ExpressionPSMC3IP [ NCBI-GEO ]   PSMC3IP [ EBI - ARRAY_EXPRESS ]   PSMC3IP [ SEEK ]   PSMC3IP [ MEM ]
Gene Expression Viewer (FireBrowse)PSMC3IP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29893
GTEX Portal (Tissue expression)PSMC3IP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2W1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2W1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2W1
Splice isoforms : SwissVarQ9P2W1
PhosPhoSitePlusQ9P2W1
Domains : Interpro (EBI)TBPIP   
Domain families : Pfam (Sanger)TBPIP (PF07106)   
Domain families : Pfam (NCBI)pfam07106   
Conserved Domain (NCBI)PSMC3IP
DMDM Disease mutations29893
Blocks (Seattle)PSMC3IP
SuperfamilyQ9P2W1
Human Protein AtlasENSG00000131470
Peptide AtlasQ9P2W1
HPRD16362
IPIIPI00009805   IPI00335760   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2W1
IntAct (EBI)Q9P2W1
FunCoupENSG00000131470
BioGRIDPSMC3IP
STRING (EMBL)PSMC3IP
ZODIACPSMC3IP
Ontologies - Pathways
QuickGOQ9P2W1
Ontology : AmiGODNA binding  cellular_component  nucleus  DNA recombination  ligand-dependent nuclear receptor transcription coactivator activity  meiotic cell cycle  regulation of nucleic acid-templated transcription  
Ontology : EGO-EBIDNA binding  cellular_component  nucleus  DNA recombination  ligand-dependent nuclear receptor transcription coactivator activity  meiotic cell cycle  regulation of nucleic acid-templated transcription  
NDEx NetworkPSMC3IP
Atlas of Cancer Signalling NetworkPSMC3IP
Wikipedia pathwaysPSMC3IP
Orthology - Evolution
OrthoDB29893
GeneTree (enSembl)ENSG00000131470
Phylogenetic Trees/Animal Genes : TreeFamPSMC3IP
HOVERGENQ9P2W1
HOGENOMQ9P2W1
Homologs : HomoloGenePSMC3IP
Homology/Alignments : Family Browser (UCSC)PSMC3IP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSMC3IP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSMC3IP
dbVarPSMC3IP
ClinVarPSMC3IP
1000_GenomesPSMC3IP 
Exome Variant ServerPSMC3IP
ExAC (Exome Aggregation Consortium)PSMC3IP (select the gene name)
Genetic variants : HAPMAP29893
Genomic Variants (DGV)PSMC3IP [DGVbeta]
DECIPHER (Syndromes)17:40724328-40729734  ENSG00000131470
CONAN: Copy Number AnalysisPSMC3IP 
Mutations
ICGC Data PortalPSMC3IP 
TCGA Data PortalPSMC3IP 
Broad Tumor PortalPSMC3IP
OASIS PortalPSMC3IP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSMC3IP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSMC3IP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSMC3IP
DgiDB (Drug Gene Interaction Database)PSMC3IP
DoCM (Curated mutations)PSMC3IP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSMC3IP (select a term)
intoGenPSMC3IP
Cancer3DPSMC3IP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608665    614324   
Orphanet1011   
MedgenPSMC3IP
Genetic Testing Registry PSMC3IP
NextProtQ9P2W1 [Medical]
TSGene29893
GENETestsPSMC3IP
Huge Navigator PSMC3IP [HugePedia]
snp3D : Map Gene to Disease29893
BioCentury BCIQPSMC3IP
ClinGenPSMC3IP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29893
Chemical/Pharm GKB GenePA143485584
Clinical trialPSMC3IP
Miscellaneous
canSAR (ICR)PSMC3IP (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSMC3IP
EVEXPSMC3IP
GoPubMedPSMC3IP
iHOPPSMC3IP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:23:21 CET 2017

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