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PSMD13 (proteasome 26S subunit, non-ATPase 13)

Identity

Alias_namesproteasome (prosome
Alias_symbol (synonym)p40.5
Rpn9
Other aliasHSPC027
S11
HGNC (Hugo) PSMD13
LocusID (NCBI) 5719
Atlas_Id 55436
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 236808 and ends at 252984 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AP2A2 (11p15.5) / PSMD13 (11p15.5)EIF3D (22q12.3) / PSMD13 (11p15.5)PSMD13 (11p15.5) / FAM157B (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSMD13   9558
Cards
Entrez_Gene (NCBI)PSMD13  5719  proteasome 26S subunit, non-ATPase 13
AliasesHSPC027; Rpn9; S11; p40.5
GeneCards (Weizmann)PSMD13
Ensembl hg19 (Hinxton)ENSG00000185627 [Gene_View]  chr11:236808-252984 [Contig_View]  PSMD13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185627 [Gene_View]  chr11:236808-252984 [Contig_View]  PSMD13 [Vega]
ICGC DataPortalENSG00000185627
TCGA cBioPortalPSMD13
AceView (NCBI)PSMD13
Genatlas (Paris)PSMD13
WikiGenes5719
SOURCE (Princeton)PSMD13
Genetics Home Reference (NIH)PSMD13
Genomic and cartography
GoldenPath hg19 (UCSC)PSMD13  -     chr11:236808-252984 +  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PSMD13  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblPSMD13 - 11p15.5 [CytoView hg19]  PSMD13 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIPSMD13 [Mapview hg19]  PSMD13 [Mapview hg38]
OMIM603481   
Gene and transcription
Genbank (Entrez)AA931044 AB009398 AF083245 AF086708 AF107836
RefSeq transcript (Entrez)NM_002817 NM_175932
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)PSMD13
Cluster EST : UnigeneHs.134688 [ NCBI ]
CGAP (NCI)Hs.134688
Alternative Splicing GalleryENSG00000185627
Gene ExpressionPSMD13 [ NCBI-GEO ]   PSMD13 [ EBI - ARRAY_EXPRESS ]   PSMD13 [ SEEK ]   PSMD13 [ MEM ]
Gene Expression Viewer (FireBrowse)PSMD13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5719
GTEX Portal (Tissue expression)PSMD13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNM6
Splice isoforms : SwissVarQ9UNM6
PhosPhoSitePlusQ9UNM6
Domains : Interpro (EBI)PCI_dom    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)PCI (PF01399)   
Domain families : Pfam (NCBI)pfam01399   
Domain families : Smart (EMBL)PINT (SM00088)  
Conserved Domain (NCBI)PSMD13
DMDM Disease mutations5719
Blocks (Seattle)PSMD13
SuperfamilyQ9UNM6
Human Protein AtlasENSG00000185627
Peptide AtlasQ9UNM6
HPRD04595
IPIIPI00375380   IPI01011099   IPI00549672   IPI00979954   IPI00552191   IPI00982005   IPI00981278   IPI00973816   IPI00982572   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNM6
IntAct (EBI)Q9UNM6
FunCoupENSG00000185627
BioGRIDPSMD13
STRING (EMBL)PSMD13
ZODIACPSMD13
Ontologies - Pathways
QuickGOQ9UNM6
Ontology : AmiGOMAPK cascade  protein polyubiquitination  proteasome complex  stimulatory C-type lectin receptor signaling pathway  antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent  structural molecule activity  nucleus  nucleoplasm  cytosol  cytosol  proteasome regulatory particle  ubiquitin-dependent protein catabolic process  regulation of cellular amino acid metabolic process  meiosis I  proteasome regulatory particle, lid subcomplex  membrane  proteasome accessory complex  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process  tumor necrosis factor-mediated signaling pathway  NIK/NF-kappaB signaling  Fc-epsilon receptor signaling pathway  proteasome-mediated ubiquitin-dependent protein catabolic process  proteasome assembly  regulation of mRNA stability  T cell receptor signaling pathway  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  Wnt signaling pathway, planar cell polarity pathway  extracellular exosome  negative regulation of canonical Wnt signaling pathway  positive regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIMAPK cascade  protein polyubiquitination  proteasome complex  stimulatory C-type lectin receptor signaling pathway  antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent  structural molecule activity  nucleus  nucleoplasm  cytosol  cytosol  proteasome regulatory particle  ubiquitin-dependent protein catabolic process  regulation of cellular amino acid metabolic process  meiosis I  proteasome regulatory particle, lid subcomplex  membrane  proteasome accessory complex  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process  tumor necrosis factor-mediated signaling pathway  NIK/NF-kappaB signaling  Fc-epsilon receptor signaling pathway  proteasome-mediated ubiquitin-dependent protein catabolic process  proteasome assembly  regulation of mRNA stability  T cell receptor signaling pathway  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  Wnt signaling pathway, planar cell polarity pathway  extracellular exosome  negative regulation of canonical Wnt signaling pathway  positive regulation of canonical Wnt signaling pathway  
Pathways : KEGGProteasome    Epstein-Barr virus infection   
NDEx NetworkPSMD13
Atlas of Cancer Signalling NetworkPSMD13
Wikipedia pathwaysPSMD13
Orthology - Evolution
OrthoDB5719
GeneTree (enSembl)ENSG00000185627
Phylogenetic Trees/Animal Genes : TreeFamPSMD13
HOVERGENQ9UNM6
HOGENOMQ9UNM6
Homologs : HomoloGenePSMD13
Homology/Alignments : Family Browser (UCSC)PSMD13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSMD13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSMD13
dbVarPSMD13
ClinVarPSMD13
1000_GenomesPSMD13 
Exome Variant ServerPSMD13
ExAC (Exome Aggregation Consortium)PSMD13 (select the gene name)
Genetic variants : HAPMAP5719
Genomic Variants (DGV)PSMD13 [DGVbeta]
DECIPHER (Syndromes)11:236808-252984  ENSG00000185627
CONAN: Copy Number AnalysisPSMD13 
Mutations
ICGC Data PortalPSMD13 
TCGA Data PortalPSMD13 
Broad Tumor PortalPSMD13
OASIS PortalPSMD13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSMD13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSMD13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSMD13
DgiDB (Drug Gene Interaction Database)PSMD13
DoCM (Curated mutations)PSMD13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSMD13 (select a term)
intoGenPSMD13
Cancer3DPSMD13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603481   
Orphanet
MedgenPSMD13
Genetic Testing Registry PSMD13
NextProtQ9UNM6 [Medical]
TSGene5719
GENETestsPSMD13
Huge Navigator PSMD13 [HugePedia]
snp3D : Map Gene to Disease5719
BioCentury BCIQPSMD13
ClinGenPSMD13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5719
Chemical/Pharm GKB GenePA33904
Clinical trialPSMD13
Miscellaneous
canSAR (ICR)PSMD13 (select the gene name)
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSMD13
EVEXPSMD13
GoPubMedPSMD13
iHOPPSMD13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:16:02 CEST 2017

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