Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PSMD5 (proteasome 26S subunit, non-ATPase 5)

Identity

Alias_namesproteasome (prosome
Alias_symbol (synonym)S5B
KIAA0072
Other alias
HGNC (Hugo) PSMD5
LocusID (NCBI) 5711
Atlas_Id 55414
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 120816054 and ends at 120843021 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PSMD5 (9q33.2) / C5 (9q33.2)PSMD5 (9q33.2) / PSMD5 (9q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSMD5   9563
Cards
Entrez_Gene (NCBI)PSMD5  5711  proteasome 26S subunit, non-ATPase 5
AliasesS5B
GeneCards (Weizmann)PSMD5
Ensembl hg19 (Hinxton)ENSG00000095261 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000095261 [Gene_View]  chr9:120816054-120843021 [Contig_View]  PSMD5 [Vega]
ICGC DataPortalENSG00000095261
TCGA cBioPortalPSMD5
AceView (NCBI)PSMD5
Genatlas (Paris)PSMD5
WikiGenes5711
SOURCE (Princeton)PSMD5
Genetics Home Reference (NIH)PSMD5
Genomic and cartography
GoldenPath hg38 (UCSC)PSMD5  -     chr9:120816054-120843021 -  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSMD5  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblPSMD5 - 9q33.2 [CytoView hg19]  PSMD5 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIPSMD5 [Mapview hg19]  PSMD5 [Mapview hg38]
OMIM604452   
Gene and transcription
Genbank (Entrez)AK001065 AK026925 AK291051 AK303007 BC014478
RefSeq transcript (Entrez)NM_001270427 NM_005047
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSMD5
Cluster EST : UnigeneHs.193725 [ NCBI ]
CGAP (NCI)Hs.193725
Alternative Splicing GalleryENSG00000095261
Gene ExpressionPSMD5 [ NCBI-GEO ]   PSMD5 [ EBI - ARRAY_EXPRESS ]   PSMD5 [ SEEK ]   PSMD5 [ MEM ]
Gene Expression Viewer (FireBrowse)PSMD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5711
GTEX Portal (Tissue expression)PSMD5
Human Protein AtlasENSG00000095261-PSMD5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16401   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16401  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16401
Splice isoforms : SwissVarQ16401
PhosPhoSitePlusQ16401
Domains : Interpro (EBI)26S_Psome_nonATP_su5    ARM-like    ARM-type_fold   
Domain families : Pfam (Sanger)Proteasom_PSMB (PF10508)   
Domain families : Pfam (NCBI)pfam10508   
Conserved Domain (NCBI)PSMD5
DMDM Disease mutations5711
Blocks (Seattle)PSMD5
SuperfamilyQ16401
Human Protein Atlas [tissue]ENSG00000095261-PSMD5 [tissue]
Peptide AtlasQ16401
HPRD05121
IPIIPI00002134   IPI00909766   IPI00983122   IPI00607835   IPI00607806   
Protein Interaction databases
DIP (DOE-UCLA)Q16401
IntAct (EBI)Q16401
FunCoupENSG00000095261
BioGRIDPSMD5
STRING (EMBL)PSMD5
ZODIACPSMD5
Ontologies - Pathways
QuickGOQ16401
Ontology : AmiGOMAPK cascade  protein polyubiquitination  proteasome complex  stimulatory C-type lectin receptor signaling pathway  antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent  protein binding  nucleoplasm  cytosol  regulation of cellular amino acid metabolic process  proteasome regulatory particle, base subcomplex  negative regulation of G2/M transition of mitotic cell cycle  protein deubiquitination  proteasome accessory complex  anaphase-promoting complex-dependent catabolic process  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  tumor necrosis factor-mediated signaling pathway  NIK/NF-kappaB signaling  Fc-epsilon receptor signaling pathway  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of mRNA stability  T cell receptor signaling pathway  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  transmembrane transport  Wnt signaling pathway, planar cell polarity pathway  regulation of transcription from RNA polymerase II promoter in response to hypoxia  proteasome regulatory particle assembly  negative regulation of canonical Wnt signaling pathway  positive regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIMAPK cascade  protein polyubiquitination  proteasome complex  stimulatory C-type lectin receptor signaling pathway  antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent  protein binding  nucleoplasm  cytosol  regulation of cellular amino acid metabolic process  proteasome regulatory particle, base subcomplex  negative regulation of G2/M transition of mitotic cell cycle  protein deubiquitination  proteasome accessory complex  anaphase-promoting complex-dependent catabolic process  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  tumor necrosis factor-mediated signaling pathway  NIK/NF-kappaB signaling  Fc-epsilon receptor signaling pathway  proteasome-mediated ubiquitin-dependent protein catabolic process  regulation of mRNA stability  T cell receptor signaling pathway  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  transmembrane transport  Wnt signaling pathway, planar cell polarity pathway  regulation of transcription from RNA polymerase II promoter in response to hypoxia  proteasome regulatory particle assembly  negative regulation of canonical Wnt signaling pathway  positive regulation of canonical Wnt signaling pathway  
NDEx NetworkPSMD5
Atlas of Cancer Signalling NetworkPSMD5
Wikipedia pathwaysPSMD5
Orthology - Evolution
OrthoDB5711
GeneTree (enSembl)ENSG00000095261
Phylogenetic Trees/Animal Genes : TreeFamPSMD5
HOVERGENQ16401
HOGENOMQ16401
Homologs : HomoloGenePSMD5
Homology/Alignments : Family Browser (UCSC)PSMD5
Gene fusions - Rearrangements
Tumor Fusion PortalPSMD5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSMD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSMD5
dbVarPSMD5
ClinVarPSMD5
1000_GenomesPSMD5 
Exome Variant ServerPSMD5
ExAC (Exome Aggregation Consortium)ENSG00000095261
GNOMAD BrowserENSG00000095261
Genetic variants : HAPMAP5711
Genomic Variants (DGV)PSMD5 [DGVbeta]
DECIPHERPSMD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSMD5 
Mutations
ICGC Data PortalPSMD5 
TCGA Data PortalPSMD5 
Broad Tumor PortalPSMD5
OASIS PortalPSMD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSMD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSMD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSMD5
DgiDB (Drug Gene Interaction Database)PSMD5
DoCM (Curated mutations)PSMD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSMD5 (select a term)
intoGenPSMD5
Cancer3DPSMD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604452   
Orphanet
DisGeNETPSMD5
MedgenPSMD5
Genetic Testing Registry PSMD5
NextProtQ16401 [Medical]
TSGene5711
GENETestsPSMD5
Target ValidationPSMD5
Huge Navigator PSMD5 [HugePedia]
snp3D : Map Gene to Disease5711
BioCentury BCIQPSMD5
ClinGenPSMD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5711
Chemical/Pharm GKB GenePA33909
Clinical trialPSMD5
Miscellaneous
canSAR (ICR)PSMD5 (select the gene name)
Probes
Litterature
PubMed63 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSMD5
EVEXPSMD5
GoPubMedPSMD5
iHOPPSMD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:30:47 CET 2017

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