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PSMD7 (proteasome 26S subunit, non-ATPase 7)

Identity

Alias_namesproteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog)
proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
Alias_symbol (synonym)S12
P40
MOV34
Rpn8
Other alias
HGNC (Hugo) PSMD7
LocusID (NCBI) 5713
Atlas_Id 41891
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 74296775 and ends at 74306288 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KLK3 (19q13.33) / PSMD7 (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSMD7   9565
Cards
Entrez_Gene (NCBI)PSMD7  5713  proteasome 26S subunit, non-ATPase 7
AliasesMOV34; P40; Rpn8; S12
GeneCards (Weizmann)PSMD7
Ensembl hg19 (Hinxton)ENSG00000103035 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103035 [Gene_View]  chr16:74296775-74306288 [Contig_View]  PSMD7 [Vega]
ICGC DataPortalENSG00000103035
TCGA cBioPortalPSMD7
AceView (NCBI)PSMD7
Genatlas (Paris)PSMD7
WikiGenes5713
SOURCE (Princeton)PSMD7
Genetics Home Reference (NIH)PSMD7
Genomic and cartography
GoldenPath hg38 (UCSC)PSMD7  -     chr16:74296775-74306288 +  16q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSMD7  -     16q23.1   [Description]    (hg19-Feb_2009)
EnsemblPSMD7 - 16q23.1 [CytoView hg19]  PSMD7 - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBIPSMD7 [Mapview hg19]  PSMD7 [Mapview hg38]
OMIM157970   
Gene and transcription
Genbank (Entrez)AK301996 AK315381 BC000338 BC012606 BM989341
RefSeq transcript (Entrez)NM_002811
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSMD7
Cluster EST : UnigeneHs.440604 [ NCBI ]
CGAP (NCI)Hs.440604
Alternative Splicing GalleryENSG00000103035
Gene ExpressionPSMD7 [ NCBI-GEO ]   PSMD7 [ EBI - ARRAY_EXPRESS ]   PSMD7 [ SEEK ]   PSMD7 [ MEM ]
Gene Expression Viewer (FireBrowse)PSMD7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5713
GTEX Portal (Tissue expression)PSMD7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51665   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51665  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51665
Splice isoforms : SwissVarP51665
PhosPhoSitePlusP51665
Domains : Interpro (EBI)JAMM/MPN+_dom    MPN_RPN7_8    Rpn11/EIF3F_C   
Domain families : Pfam (Sanger)JAB (PF01398)    MitMem_reg (PF13012)   
Domain families : Pfam (NCBI)pfam01398    pfam13012   
Domain families : Smart (EMBL)JAB_MPN (SM00232)  
Conserved Domain (NCBI)PSMD7
DMDM Disease mutations5713
Blocks (Seattle)PSMD7
PDB (SRS)2O95    2O96    5GJQ    5GJR    5L4K    5T0C    5T0G    5T0H    5T0I    5T0J   
PDB (PDBSum)2O95    2O96    5GJQ    5GJR    5L4K    5T0C    5T0G    5T0H    5T0I    5T0J   
PDB (IMB)2O95    2O96    5GJQ    5GJR    5L4K    5T0C    5T0G    5T0H    5T0I    5T0J   
PDB (RSDB)2O95    2O96    5GJQ    5GJR    5L4K    5T0C    5T0G    5T0H    5T0I    5T0J   
Structural Biology KnowledgeBase2O95    2O96    5GJQ    5GJR    5L4K    5T0C    5T0G    5T0H    5T0I    5T0J   
SCOP (Structural Classification of Proteins)2O95    2O96    5GJQ    5GJR    5L4K    5T0C    5T0G    5T0H    5T0I    5T0J   
CATH (Classification of proteins structures)2O95    2O96    5GJQ    5GJR    5L4K    5T0C    5T0G    5T0H    5T0I    5T0J   
SuperfamilyP51665
Human Protein AtlasENSG00000103035
Peptide AtlasP51665
HPRD01147
IPIIPI00019927   IPI01009629   
Protein Interaction databases
DIP (DOE-UCLA)P51665
IntAct (EBI)P51665
FunCoupENSG00000103035
BioGRIDPSMD7
STRING (EMBL)PSMD7
ZODIACPSMD7
Ontologies - Pathways
QuickGOP51665
Ontology : AmiGOMAPK cascade  protein polyubiquitination  proteasome complex  stimulatory C-type lectin receptor signaling pathway  antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent  protein binding  extracellular region  nucleus  nucleoplasm  nucleoplasm  cytosol  proteasome regulatory particle  regulation of cellular amino acid metabolic process  negative regulation of G2/M transition of mitotic cell cycle  membrane  protein deubiquitination  anaphase-promoting complex-dependent catabolic process  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  tumor necrosis factor-mediated signaling pathway  secretory granule lumen  NIK/NF-kappaB signaling  Fc-epsilon receptor signaling pathway  protein homodimerization activity  proteasome-mediated ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  neutrophil degranulation  regulation of mRNA stability  T cell receptor signaling pathway  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  transmembrane transport  Wnt signaling pathway, planar cell polarity pathway  regulation of transcription from RNA polymerase II promoter in response to hypoxia  extracellular exosome  negative regulation of canonical Wnt signaling pathway  positive regulation of canonical Wnt signaling pathway  ficolin-1-rich granule lumen  
Ontology : EGO-EBIMAPK cascade  protein polyubiquitination  proteasome complex  stimulatory C-type lectin receptor signaling pathway  antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent  protein binding  extracellular region  nucleus  nucleoplasm  nucleoplasm  cytosol  proteasome regulatory particle  regulation of cellular amino acid metabolic process  negative regulation of G2/M transition of mitotic cell cycle  membrane  protein deubiquitination  anaphase-promoting complex-dependent catabolic process  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  tumor necrosis factor-mediated signaling pathway  secretory granule lumen  NIK/NF-kappaB signaling  Fc-epsilon receptor signaling pathway  protein homodimerization activity  proteasome-mediated ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  neutrophil degranulation  regulation of mRNA stability  T cell receptor signaling pathway  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  transmembrane transport  Wnt signaling pathway, planar cell polarity pathway  regulation of transcription from RNA polymerase II promoter in response to hypoxia  extracellular exosome  negative regulation of canonical Wnt signaling pathway  positive regulation of canonical Wnt signaling pathway  ficolin-1-rich granule lumen  
Pathways : KEGGProteasome    Epstein-Barr virus infection   
NDEx NetworkPSMD7
Atlas of Cancer Signalling NetworkPSMD7
Wikipedia pathwaysPSMD7
Orthology - Evolution
OrthoDB5713
GeneTree (enSembl)ENSG00000103035
Phylogenetic Trees/Animal Genes : TreeFamPSMD7
HOVERGENP51665
HOGENOMP51665
Homologs : HomoloGenePSMD7
Homology/Alignments : Family Browser (UCSC)PSMD7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSMD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSMD7
dbVarPSMD7
ClinVarPSMD7
1000_GenomesPSMD7 
Exome Variant ServerPSMD7
ExAC (Exome Aggregation Consortium)PSMD7 (select the gene name)
Genetic variants : HAPMAP5713
Genomic Variants (DGV)PSMD7 [DGVbeta]
DECIPHERPSMD7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSMD7 
Mutations
ICGC Data PortalPSMD7 
TCGA Data PortalPSMD7 
Broad Tumor PortalPSMD7
OASIS PortalPSMD7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSMD7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSMD7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSMD7
DgiDB (Drug Gene Interaction Database)PSMD7
DoCM (Curated mutations)PSMD7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSMD7 (select a term)
intoGenPSMD7
Cancer3DPSMD7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM157970   
Orphanet
MedgenPSMD7
Genetic Testing Registry PSMD7
NextProtP51665 [Medical]
TSGene5713
GENETestsPSMD7
Target ValidationPSMD7
Huge Navigator PSMD7 [HugePedia]
snp3D : Map Gene to Disease5713
BioCentury BCIQPSMD7
ClinGenPSMD7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5713
Chemical/Pharm GKB GenePA33911
Clinical trialPSMD7
Miscellaneous
canSAR (ICR)PSMD7 (select the gene name)
Probes
Litterature
PubMed103 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSMD7
EVEXPSMD7
GoPubMedPSMD7
iHOPPSMD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:51:34 CEST 2017

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