| Nomenclature |
|---|
| HGNC (Hugo) | PSMD9 9567 |
| Cards |
|---|
| Entrez_Gene (NCBI) | PSMD9 5715 proteasome 26S subunit, non-ATPase 9 |
| Aliases | Rpn4; p27 |
| GeneCards (Weizmann) | PSMD9 |
| Ensembl hg19 (Hinxton) | ENSG00000110801 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000110801 [Gene_View] ENSG00000110801 [Sequence] chr12:121888790-121918297 [Contig_View] PSMD9 [Vega] |
| ICGC DataPortal | ENSG00000110801 |
| TCGA cBioPortal | PSMD9 |
| AceView (NCBI) | PSMD9 |
| Genatlas (Paris) | PSMD9 |
| WikiGenes | 5715 |
| SOURCE (Princeton) | PSMD9 |
| Genetics Home Reference (NIH) | PSMD9 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | PSMD9 - chr12:121888790-121918297 + 12q24.31 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | PSMD9 - 12q24.31 [Description] (hg19-Feb_2009) |
| GoldenPath | PSMD9 - 12q24.31 [CytoView hg19] PSMD9 - 12q24.31 [CytoView hg38] |
| Genome Data Viewer NCBI | PSMD9 [Mapview hg19] |
| OMIM | 603146 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AK055339 AK315389 BC002383 BC004184 BC004213 |
| RefSeq transcript (Entrez) | NM_001261400 NM_002813 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | PSMD9 |
| Alternative Splicing Gallery | ENSG00000110801 |
| Gene Expression | PSMD9 [ NCBI-GEO ] PSMD9 [ EBI - ARRAY_EXPRESS ]
PSMD9 [ SEEK ] PSMD9 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | PSMD9 [ Firebrowse - Broad ] |
| Genevisible | Expression of PSMD9 in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 5715 |
| GTEX Portal (Tissue expression) | PSMD9 |
| Human Protein Atlas | ENSG00000110801-PSMD9 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | O00233 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | O00233 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | O00233 |
| Splice isoforms : SwissVar | O00233 |
| PhosPhoSitePlus | O00233 |
| Domains : Interpro (EBI) | Nas2_N PDZ PDZ_sf PSMD9 |
| Domain families : Pfam (Sanger) | Nas2_N (PF18265) PDZ_2 (PF13180) |
| Domain families : Pfam (NCBI) | pfam18265 pfam13180 |
| Domain families : Smart (EMBL) | PDZ (SM00228) |
| Conserved Domain (NCBI) | PSMD9 |
| DMDM Disease mutations | 5715 |
| Superfamily | O00233 |
| Human Protein Atlas [tissue] | ENSG00000110801-PSMD9 [tissue] |
| Peptide Atlas | O00233 |
| HPRD | 04394 |
| IPI | IPI00010860 IPI00216220 IPI00791380 IPI01014410 IPI01014017 IPI01013622 IPI01013452 IPI01013039 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | O00233 |
| IntAct (EBI) | O00233 |
| FunCoup | ENSG00000110801 |
| BioGRID | PSMD9 |
| STRING (EMBL) | PSMD9 |
| ZODIAC | PSMD9 |
| Ontologies - Pathways |
|---|
| QuickGO | O00233 |
| Ontology : AmiGO | MAPK cascade protein polyubiquitination stimulatory C-type lectin receptor signaling pathway antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent transcription coactivator activity protein binding nucleus nucleus nucleoplasm cytoplasm cytosol proteasome regulatory particle ubiquitin-dependent protein catabolic process regulation of cellular amino acid metabolic process proteasome regulatory particle, base subcomplex negative regulation of G2/M transition of mitotic cell cycle protein deubiquitination anaphase-promoting complex-dependent catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process positive regulation of insulin secretion tumor necrosis factor-mediated signaling pathway NIK/NF-kappaB signaling Fc-epsilon receptor signaling pathway proteasome-mediated ubiquitin-dependent protein catabolic process bHLH transcription factor binding regulation of mRNA stability post-translational protein modification positive regulation of transcription, DNA-templated negative regulation of insulin secretion T cell receptor signaling pathway transmembrane transport Wnt signaling pathway, planar cell polarity pathway regulation of transcription from RNA polymerase II promoter in response to hypoxia interleukin-1-mediated signaling pathway proteasome regulatory particle assembly proteasome regulatory particle assembly negative regulation of canonical Wnt signaling pathway positive regulation of canonical Wnt signaling pathway regulation of mitotic cell cycle phase transition regulation of hematopoietic stem cell differentiation |
| Ontology : EGO-EBI | MAPK cascade protein polyubiquitination stimulatory C-type lectin receptor signaling pathway antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent transcription coactivator activity protein binding nucleus nucleus nucleoplasm cytoplasm cytosol proteasome regulatory particle ubiquitin-dependent protein catabolic process regulation of cellular amino acid metabolic process proteasome regulatory particle, base subcomplex negative regulation of G2/M transition of mitotic cell cycle protein deubiquitination anaphase-promoting complex-dependent catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process positive regulation of insulin secretion tumor necrosis factor-mediated signaling pathway NIK/NF-kappaB signaling Fc-epsilon receptor signaling pathway proteasome-mediated ubiquitin-dependent protein catabolic process bHLH transcription factor binding regulation of mRNA stability post-translational protein modification positive regulation of transcription, DNA-templated negative regulation of insulin secretion T cell receptor signaling pathway transmembrane transport Wnt signaling pathway, planar cell polarity pathway regulation of transcription from RNA polymerase II promoter in response to hypoxia interleukin-1-mediated signaling pathway proteasome regulatory particle assembly proteasome regulatory particle assembly negative regulation of canonical Wnt signaling pathway positive regulation of canonical Wnt signaling pathway regulation of mitotic cell cycle phase transition regulation of hematopoietic stem cell differentiation |
| NDEx Network | PSMD9 |
| Atlas of Cancer Signalling Network | PSMD9 |
| Wikipedia pathways | PSMD9 |
| Orthology - Evolution |
|---|
| OrthoDB | 5715 |
| GeneTree (enSembl) | ENSG00000110801 |
| Phylogenetic Trees/Animal Genes : TreeFam | PSMD9 |
| HOGENOM | O00233 |
| Homologs : HomoloGene | PSMD9 |
| Homology/Alignments : Family Browser (UCSC) | PSMD9 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | PSMD9 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | PSMD9 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | PSMD9 |
| dbVar | PSMD9 |
| ClinVar | PSMD9 |
| 1000_Genomes | PSMD9 |
| Exome Variant Server | PSMD9 |
| GNOMAD Browser | ENSG00000110801 |
| Varsome Browser | PSMD9 |
| Genetic variants : HAPMAP | 5715 |
| Genomic Variants (DGV) | PSMD9 [DGVbeta] |
| DECIPHER | PSMD9 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | PSMD9 |
| Mutations |
|---|
| ICGC Data Portal | PSMD9 |
| TCGA Data Portal | PSMD9 |
| Broad Tumor Portal | PSMD9 |
| OASIS Portal | PSMD9 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | PSMD9 [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | PSMD9 |
| Mutations and Diseases : HGMD | PSMD9 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | select PSMD9 |
| DgiDB (Drug Gene Interaction Database) | PSMD9 |
| DoCM (Curated mutations) | PSMD9 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | PSMD9 (select a term) |
| intoGen | PSMD9 |
| Cancer3D | PSMD9 (select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 603146 |
| Orphanet | |
| DisGeNET | PSMD9 |
| Medgen | PSMD9 |
| Genetic Testing Registry | PSMD9
|
| NextProt | O00233 [Medical] |
| TSGene | 5715 |
| GENETests | PSMD9 |
| Open Targets Genetics | ENSG00000110801 [validation] |
| snp3D : Map Gene to Disease | 5715 |
| BioCentury BCIQ | PSMD9 |
| ClinGen | PSMD9 |
| Clinical trials, drugs, therapy |
|---|
| Protein Interactions : CTD | 5715 |
| Pharm GKB Gene | PA33913 |
| Clinical trial | PSMD9 |
| Miscellaneous |
|---|
| canSAR (ICR) | PSMD9 (select the gene name) |
| Harmonizome | PSMD9 |
| DataMed Index | PSMD9 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 123 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | PSMD9 |
| EVEX | PSMD9 |
