Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PSMD9 (proteasome 26S subunit, non-ATPase 9)

Identity

Alias_namesproteasome (prosome
Alias_symbol (synonym)p27
Rpn4
Other alias
HGNC (Hugo) PSMD9
LocusID (NCBI) 5715
Atlas_Id 45887
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 121888731 and ends at 121917865 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSMD9   9567
Cards
Entrez_Gene (NCBI)PSMD9  5715  proteasome 26S subunit, non-ATPase 9
AliasesRpn4; p27
GeneCards (Weizmann)PSMD9
Ensembl hg19 (Hinxton)ENSG00000110801 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110801 [Gene_View]  ENSG00000110801 [Sequence]  chr12:121888731-121917865 [Contig_View]  PSMD9 [Vega]
ICGC DataPortalENSG00000110801
TCGA cBioPortalPSMD9
AceView (NCBI)PSMD9
Genatlas (Paris)PSMD9
WikiGenes5715
SOURCE (Princeton)PSMD9
Genetics Home Reference (NIH)PSMD9
Genomic and cartography
GoldenPath hg38 (UCSC)PSMD9  -     chr12:121888731-121917865 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSMD9  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblPSMD9 - 12q24.31 [CytoView hg19]  PSMD9 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIPSMD9 [Mapview hg19]  PSMD9 [Mapview hg38]
OMIM603146   
Gene and transcription
Genbank (Entrez)AK055339 AK315389 BC002383 BC004184 BC004213
RefSeq transcript (Entrez)NM_001261400 NM_002813
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSMD9
Cluster EST : UnigeneHs.131151 [ NCBI ]
CGAP (NCI)Hs.131151
Alternative Splicing GalleryENSG00000110801
Gene ExpressionPSMD9 [ NCBI-GEO ]   PSMD9 [ EBI - ARRAY_EXPRESS ]   PSMD9 [ SEEK ]   PSMD9 [ MEM ]
Gene Expression Viewer (FireBrowse)PSMD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5715
GTEX Portal (Tissue expression)PSMD9
Human Protein AtlasENSG00000110801-PSMD9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00233   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00233  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00233
Splice isoforms : SwissVarO00233
PhosPhoSitePlusO00233
Domains : Interpro (EBI)PDZ    PDZ_sf    PSMD9   
Domain families : Pfam (Sanger)PDZ_2 (PF13180)   
Domain families : Pfam (NCBI)pfam13180   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)PSMD9
DMDM Disease mutations5715
Blocks (Seattle)PSMD9
SuperfamilyO00233
Human Protein Atlas [tissue]ENSG00000110801-PSMD9 [tissue]
Peptide AtlasO00233
HPRD04394
IPIIPI00010860   IPI00216220   IPI00791380   IPI01014410   IPI01014017   IPI01013622   IPI01013452   IPI01013039   
Protein Interaction databases
DIP (DOE-UCLA)O00233
IntAct (EBI)O00233
FunCoupENSG00000110801
BioGRIDPSMD9
STRING (EMBL)PSMD9
ZODIACPSMD9
Ontologies - Pathways
QuickGOO00233
Ontology : AmiGOtranscription coactivator activity  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  cytosol  proteasome regulatory particle  ubiquitin-dependent protein catabolic process  proteasome regulatory particle, base subcomplex  proteasome regulatory particle, base subcomplex  protein deubiquitination  positive regulation of insulin secretion  bHLH transcription factor binding  post-translational protein modification  positive regulation of transcription, DNA-templated  negative regulation of insulin secretion  proteasome regulatory particle assembly  proteasome regulatory particle assembly  
Ontology : EGO-EBItranscription coactivator activity  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  cytosol  proteasome regulatory particle  ubiquitin-dependent protein catabolic process  proteasome regulatory particle, base subcomplex  proteasome regulatory particle, base subcomplex  protein deubiquitination  positive regulation of insulin secretion  bHLH transcription factor binding  post-translational protein modification  positive regulation of transcription, DNA-templated  negative regulation of insulin secretion  proteasome regulatory particle assembly  proteasome regulatory particle assembly  
NDEx NetworkPSMD9
Atlas of Cancer Signalling NetworkPSMD9
Wikipedia pathwaysPSMD9
Orthology - Evolution
OrthoDB5715
GeneTree (enSembl)ENSG00000110801
Phylogenetic Trees/Animal Genes : TreeFamPSMD9
HOVERGENO00233
HOGENOMO00233
Homologs : HomoloGenePSMD9
Homology/Alignments : Family Browser (UCSC)PSMD9
Gene fusions - Rearrangements
Fusion : QuiverPSMD9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSMD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSMD9
dbVarPSMD9
ClinVarPSMD9
1000_GenomesPSMD9 
Exome Variant ServerPSMD9
ExAC (Exome Aggregation Consortium)ENSG00000110801
GNOMAD BrowserENSG00000110801
Varsome BrowserPSMD9
Genetic variants : HAPMAP5715
Genomic Variants (DGV)PSMD9 [DGVbeta]
DECIPHERPSMD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSMD9 
Mutations
ICGC Data PortalPSMD9 
TCGA Data PortalPSMD9 
Broad Tumor PortalPSMD9
OASIS PortalPSMD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSMD9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSMD9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSMD9
DgiDB (Drug Gene Interaction Database)PSMD9
DoCM (Curated mutations)PSMD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSMD9 (select a term)
intoGenPSMD9
Cancer3DPSMD9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603146   
Orphanet
DisGeNETPSMD9
MedgenPSMD9
Genetic Testing Registry PSMD9
NextProtO00233 [Medical]
TSGene5715
GENETestsPSMD9
Target ValidationPSMD9
Huge Navigator PSMD9 [HugePedia]
snp3D : Map Gene to Disease5715
BioCentury BCIQPSMD9
ClinGenPSMD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5715
Chemical/Pharm GKB GenePA33913
Clinical trialPSMD9
Miscellaneous
canSAR (ICR)PSMD9 (select the gene name)
Probes
Litterature
PubMed112 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSMD9
EVEXPSMD9
GoPubMedPSMD9
iHOPPSMD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:33:01 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.