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PSMG2 (proteasome assembly chaperone 2)

Identity

Alias_namesTNFSF5IP1
tumor necrosis factor superfamily, member 5-induced protein 1
proteasome (prosome, macropain) assembly chaperone 2
Alias_symbol (synonym)HCCA3
MDS003
MGC15092
CLAST3
HsT1707
PAC2
Other alias
HGNC (Hugo) PSMG2
LocusID (NCBI) 56984
Atlas_Id 42642
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 12702987 and ends at 12725739 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NCL (2q37.1) / PSMG2 (18p11.21)PSMG2 (18p11.21) / PI4KAP2 (22q11.21)PSMG2 (18p11.21) / PIP4K2A (10p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSMG2   24929
Cards
Entrez_Gene (NCBI)PSMG2  56984  proteasome assembly chaperone 2
AliasesCLAST3; HCCA3; HsT1707; MDS003; 
PAC2; TNFSF5IP1
GeneCards (Weizmann)PSMG2
Ensembl hg19 (Hinxton)ENSG00000128789 [Gene_View]  chr18:12702987-12725739 [Contig_View]  PSMG2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000128789 [Gene_View]  chr18:12702987-12725739 [Contig_View]  PSMG2 [Vega]
ICGC DataPortalENSG00000128789
TCGA cBioPortalPSMG2
AceView (NCBI)PSMG2
Genatlas (Paris)PSMG2
WikiGenes56984
SOURCE (Princeton)PSMG2
Genetics Home Reference (NIH)PSMG2
Genomic and cartography
GoldenPath hg19 (UCSC)PSMG2  -     chr18:12702987-12725739 +  18p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PSMG2  -     18p11.21   [Description]    (hg38-Dec_2013)
EnsemblPSMG2 - 18p11.21 [CytoView hg19]  PSMG2 - 18p11.21 [CytoView hg38]
Mapping of homologs : NCBIPSMG2 [Mapview hg19]  PSMG2 [Mapview hg38]
OMIM609702   
Gene and transcription
Genbank (Entrez)AF068295 AF161378 AF168712 AF276707 AK025410
RefSeq transcript (Entrez)NM_020232 NM_147163
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010859 NW_004929409
Consensus coding sequences : CCDS (NCBI)PSMG2
Cluster EST : UnigeneHs.464652 [ NCBI ]
CGAP (NCI)Hs.464652
Alternative Splicing GalleryENSG00000128789
Gene ExpressionPSMG2 [ NCBI-GEO ]   PSMG2 [ EBI - ARRAY_EXPRESS ]   PSMG2 [ SEEK ]   PSMG2 [ MEM ]
Gene Expression Viewer (FireBrowse)PSMG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56984
GTEX Portal (Tissue expression)PSMG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969U7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969U7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969U7
Splice isoforms : SwissVarQ969U7
PhosPhoSitePlusQ969U7
Domains : Interpro (EBI)Proteasome_assmbl_chaperone_2    Proteasome_assmbl_chp_2_euk   
Domain families : Pfam (Sanger)PAC2 (PF09754)   
Domain families : Pfam (NCBI)pfam09754   
Conserved Domain (NCBI)PSMG2
DMDM Disease mutations56984
Blocks (Seattle)PSMG2
SuperfamilyQ969U7
Human Protein AtlasENSG00000128789
Peptide AtlasQ969U7
HPRD11638
IPIIPI00644482   IPI01011517   IPI00983683   
Protein Interaction databases
DIP (DOE-UCLA)Q969U7
IntAct (EBI)Q969U7
FunCoupENSG00000128789
BioGRIDPSMG2
STRING (EMBL)PSMG2
ZODIACPSMG2
Ontologies - Pathways
QuickGOQ969U7
Ontology : AmiGOproteasome complex  protein binding  nucleus  nucleus  cytosol  mitotic spindle assembly checkpoint  negative regulation of apoptotic process  proteasome assembly  
Ontology : EGO-EBIproteasome complex  protein binding  nucleus  nucleus  cytosol  mitotic spindle assembly checkpoint  negative regulation of apoptotic process  proteasome assembly  
NDEx NetworkPSMG2
Atlas of Cancer Signalling NetworkPSMG2
Wikipedia pathwaysPSMG2
Orthology - Evolution
OrthoDB56984
GeneTree (enSembl)ENSG00000128789
Phylogenetic Trees/Animal Genes : TreeFamPSMG2
HOVERGENQ969U7
HOGENOMQ969U7
Homologs : HomoloGenePSMG2
Homology/Alignments : Family Browser (UCSC)PSMG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSMG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSMG2
dbVarPSMG2
ClinVarPSMG2
1000_GenomesPSMG2 
Exome Variant ServerPSMG2
ExAC (Exome Aggregation Consortium)PSMG2 (select the gene name)
Genetic variants : HAPMAP56984
Genomic Variants (DGV)PSMG2 [DGVbeta]
DECIPHER (Syndromes)18:12702987-12725739  ENSG00000128789
CONAN: Copy Number AnalysisPSMG2 
Mutations
ICGC Data PortalPSMG2 
TCGA Data PortalPSMG2 
Broad Tumor PortalPSMG2
OASIS PortalPSMG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSMG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSMG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSMG2
DgiDB (Drug Gene Interaction Database)PSMG2
DoCM (Curated mutations)PSMG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSMG2 (select a term)
intoGenPSMG2
Cancer3DPSMG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609702   
Orphanet
MedgenPSMG2
Genetic Testing Registry PSMG2
NextProtQ969U7 [Medical]
TSGene56984
GENETestsPSMG2
Huge Navigator PSMG2 [HugePedia]
snp3D : Map Gene to Disease56984
BioCentury BCIQPSMG2
ClinGenPSMG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56984
Chemical/Pharm GKB GenePA162400246
Clinical trialPSMG2
Miscellaneous
canSAR (ICR)PSMG2 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSMG2
EVEXPSMG2
GoPubMedPSMG2
iHOPPSMG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:23:26 CET 2017

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