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PSMG2 (proteasome assembly chaperone 2)

Identity

Alias (NCBI)CLAST3
HCCA3
HsT1707
MDS003
PAC2
PRAAS4
TNFSF5IP1
HGNC (Hugo) PSMG2
HGNC Alias symbHCCA3
MDS003
MGC15092
CLAST3
HsT1707
PAC2
HGNC Alias namehepatocellular carcinoma susceptibility protein
 CD40 ligand-activated specific transcript 3
HGNC Previous nameTNFSF5IP1
HGNC Previous nametumor necrosis factor superfamily, member 5-induced protein 1
 proteasome (prosome, macropain) assembly chaperone 2
LocusID (NCBI) 56984
Atlas_Id 42642
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 12658739 and ends at 12725741 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NCL (2q37.1) / PSMG2 (18p11.21)PSMG2 (18p11.21) / PI4KAP2 (22q11.21)PSMG2 (18p11.21) / PIP4K2A (10p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PSMG2   24929
Cards
Entrez_Gene (NCBI)PSMG2    proteasome assembly chaperone 2
AliasesCLAST3; HCCA3; HsT1707; MDS003; 
PAC2; PRAAS4; TNFSF5IP1
GeneCards (Weizmann)PSMG2
Ensembl hg19 (Hinxton)ENSG00000128789 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128789 [Gene_View]  ENSG00000128789 [Sequence]  chr18:12658739-12725741 [Contig_View]  PSMG2 [Vega]
ICGC DataPortalENSG00000128789
TCGA cBioPortalPSMG2
AceView (NCBI)PSMG2
Genatlas (Paris)PSMG2
SOURCE (Princeton)PSMG2
Genetics Home Reference (NIH)PSMG2
Genomic and cartography
GoldenPath hg38 (UCSC)PSMG2  -     chr18:12658739-12725741 +  18p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSMG2  -     18p11.21   [Description]    (hg19-Feb_2009)
GoldenPathPSMG2 - 18p11.21 [CytoView hg19]  PSMG2 - 18p11.21 [CytoView hg38]
ImmunoBaseENSG00000128789
Genome Data Viewer NCBIPSMG2 [Mapview hg19]  
OMIM609702   619183   
Gene and transcription
Genbank (Entrez)AF068295 AF161378 AF168712 AF276707 AK025410
RefSeq transcript (Entrez)NM_020232 NM_147163
Consensus coding sequences : CCDS (NCBI)PSMG2
Gene ExpressionPSMG2 [ NCBI-GEO ]   PSMG2 [ EBI - ARRAY_EXPRESS ]   PSMG2 [ SEEK ]   PSMG2 [ MEM ]
Gene Expression Viewer (FireBrowse)PSMG2 [ Firebrowse - Broad ]
GenevisibleExpression of PSMG2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56984
GTEX Portal (Tissue expression)PSMG2
Human Protein AtlasENSG00000128789-PSMG2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969U7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969U7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969U7
PhosPhoSitePlusQ969U7
Domains : Interpro (EBI)Proteasome_assmbl_chaperone_2    Proteasome_assmbl_chp_2_euk    PSMG2_sf   
Domain families : Pfam (Sanger)PAC2 (PF09754)   
Domain families : Pfam (NCBI)pfam09754   
Conserved Domain (NCBI)PSMG2
SuperfamilyQ969U7
AlphaFold pdb e-kbQ969U7   
Human Protein Atlas [tissue]ENSG00000128789-PSMG2 [tissue]
HPRD11638
Protein Interaction databases
DIP (DOE-UCLA)Q969U7
IntAct (EBI)Q969U7
BioGRIDPSMG2
STRING (EMBL)PSMG2
ZODIACPSMG2
Ontologies - Pathways
QuickGOQ969U7
Ontology : AmiGOprotein binding  nucleus  nucleus  nucleus  cytosol  mitotic spindle assembly checkpoint signaling  negative regulation of apoptotic process  proteasome assembly  chaperone-mediated protein complex assembly  chaperone-mediated protein complex assembly  molecular adaptor activity  chaperone complex  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  nucleus  cytosol  mitotic spindle assembly checkpoint signaling  negative regulation of apoptotic process  proteasome assembly  chaperone-mediated protein complex assembly  chaperone-mediated protein complex assembly  molecular adaptor activity  chaperone complex  
NDEx NetworkPSMG2
Atlas of Cancer Signalling NetworkPSMG2
Wikipedia pathwaysPSMG2
Orthology - Evolution
OrthoDB56984
GeneTree (enSembl)ENSG00000128789
Phylogenetic Trees/Animal Genes : TreeFamPSMG2
Homologs : HomoloGenePSMG2
Homology/Alignments : Family Browser (UCSC)PSMG2
Gene fusions - Rearrangements
Fusion : QuiverPSMG2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSMG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSMG2
dbVarPSMG2
ClinVarPSMG2
MonarchPSMG2
1000_GenomesPSMG2 
Exome Variant ServerPSMG2
GNOMAD BrowserENSG00000128789
Varsome BrowserPSMG2
ACMGPSMG2 variants
VarityQ969U7
Genomic Variants (DGV)PSMG2 [DGVbeta]
DECIPHERPSMG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSMG2 
Mutations
ICGC Data PortalPSMG2 
TCGA Data PortalPSMG2 
Broad Tumor PortalPSMG2
OASIS PortalPSMG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSMG2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPSMG2
Mutations and Diseases : HGMDPSMG2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPSMG2
DgiDB (Drug Gene Interaction Database)PSMG2
DoCM (Curated mutations)PSMG2
CIViC (Clinical Interpretations of Variants in Cancer)PSMG2
Cancer3DPSMG2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609702    619183   
Orphanet
DisGeNETPSMG2
MedgenPSMG2
Genetic Testing Registry PSMG2
NextProtQ969U7 [Medical]
GENETestsPSMG2
Target ValidationPSMG2
Huge Navigator PSMG2 [HugePedia]
ClinGenPSMG2
Clinical trials, drugs, therapy
MyCancerGenomePSMG2
Protein Interactions : CTDPSMG2
Pharm GKB GenePA162400246
PharosQ969U7
Clinical trialPSMG2
Miscellaneous
canSAR (ICR)PSMG2
HarmonizomePSMG2
DataMed IndexPSMG2
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPSMG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:27:20 CEST 2021

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