Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PSORS1C1 (psoriasis susceptibility 1 candidate 1)

Identity

Alias_namesC6orf16
chromosome 6 open reading frame 16
Alias_symbol (synonym)SEEK1
Other alias
HGNC (Hugo) PSORS1C1
LocusID (NCBI) 170679
Atlas_Id 72359
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31114831 and ends at 31140092 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSORS1C1   17202
Cards
Entrez_Gene (NCBI)PSORS1C1  170679  psoriasis susceptibility 1 candidate 1
AliasesC6orf16; SEEK1
GeneCards (Weizmann)PSORS1C1
Ensembl hg19 (Hinxton)ENSG00000204540 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204540 [Gene_View]  ENSG00000204540 [Sequence]  chr6:31114831-31140092 [Contig_View]  PSORS1C1 [Vega]
ICGC DataPortalENSG00000204540
TCGA cBioPortalPSORS1C1
AceView (NCBI)PSORS1C1
Genatlas (Paris)PSORS1C1
WikiGenes170679
SOURCE (Princeton)PSORS1C1
Genetics Home Reference (NIH)PSORS1C1
Genomic and cartography
GoldenPath hg38 (UCSC)PSORS1C1  -     chr6:31114831-31140092 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSORS1C1  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblPSORS1C1 - 6p21.33 [CytoView hg19]  PSORS1C1 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIPSORS1C1 [Mapview hg19]  PSORS1C1 [Mapview hg38]
OMIM613525   
Gene and transcription
Genbank (Entrez)AB031479 AF484418 AF484419 AI243345 AK309151
RefSeq transcript (Entrez)NM_014068
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_021348 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248
Consensus coding sequences : CCDS (NCBI)PSORS1C1
Cluster EST : UnigeneHs.310958 [ NCBI ]
CGAP (NCI)Hs.310958
Alternative Splicing GalleryENSG00000204540
Gene ExpressionPSORS1C1 [ NCBI-GEO ]   PSORS1C1 [ EBI - ARRAY_EXPRESS ]   PSORS1C1 [ SEEK ]   PSORS1C1 [ MEM ]
Gene Expression Viewer (FireBrowse)PSORS1C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170679
GTEX Portal (Tissue expression)PSORS1C1
Human Protein AtlasENSG00000204540-PSORS1C1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIG5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIG5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIG5
Splice isoforms : SwissVarQ9UIG5
PhosPhoSitePlusQ9UIG5
Domains : Interpro (EBI)SEEK1   
Domain families : Pfam (Sanger)SEEK1 (PF15357)   
Domain families : Pfam (NCBI)pfam15357   
Conserved Domain (NCBI)PSORS1C1
DMDM Disease mutations170679
Blocks (Seattle)PSORS1C1
SuperfamilyQ9UIG5
Human Protein Atlas [tissue]ENSG00000204540-PSORS1C1 [tissue]
Peptide AtlasQ9UIG5
HPRD17920
IPIIPI00328126   IPI01021972   IPI00646683   IPI00394730   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIG5
IntAct (EBI)Q9UIG5
FunCoupENSG00000204540
BioGRIDPSORS1C1
STRING (EMBL)PSORS1C1
ZODIACPSORS1C1
Ontologies - Pathways
QuickGOQ9UIG5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPSORS1C1
Atlas of Cancer Signalling NetworkPSORS1C1
Wikipedia pathwaysPSORS1C1
Orthology - Evolution
OrthoDB170679
GeneTree (enSembl)ENSG00000204540
Phylogenetic Trees/Animal Genes : TreeFamPSORS1C1
HOVERGENQ9UIG5
HOGENOMQ9UIG5
Homologs : HomoloGenePSORS1C1
Homology/Alignments : Family Browser (UCSC)PSORS1C1
Gene fusions - Rearrangements
Fusion : QuiverPSORS1C1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSORS1C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSORS1C1
dbVarPSORS1C1
ClinVarPSORS1C1
1000_GenomesPSORS1C1 
Exome Variant ServerPSORS1C1
ExAC (Exome Aggregation Consortium)ENSG00000204540
GNOMAD BrowserENSG00000204540
Varsome BrowserPSORS1C1
Genetic variants : HAPMAP170679
Genomic Variants (DGV)PSORS1C1 [DGVbeta]
DECIPHERPSORS1C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSORS1C1 
Mutations
ICGC Data PortalPSORS1C1 
TCGA Data PortalPSORS1C1 
Broad Tumor PortalPSORS1C1
OASIS PortalPSORS1C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSORS1C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSORS1C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSORS1C1
DgiDB (Drug Gene Interaction Database)PSORS1C1
DoCM (Curated mutations)PSORS1C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSORS1C1 (select a term)
intoGenPSORS1C1
Cancer3DPSORS1C1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613525   
Orphanet
DisGeNETPSORS1C1
MedgenPSORS1C1
Genetic Testing Registry PSORS1C1
NextProtQ9UIG5 [Medical]
TSGene170679
GENETestsPSORS1C1
Target ValidationPSORS1C1
Huge Navigator PSORS1C1 [HugePedia]
snp3D : Map Gene to Disease170679
BioCentury BCIQPSORS1C1
ClinGenPSORS1C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170679
Chemical/Pharm GKB GenePA33919
Clinical trialPSORS1C1
Miscellaneous
canSAR (ICR)PSORS1C1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSORS1C1
EVEXPSORS1C1
GoPubMedPSORS1C1
iHOPPSORS1C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:25:33 CEST 2018

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