Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PSORS1C2 (psoriasis susceptibility 1 candidate 2)

Identity

Alias_namesC6orf17
chromosome 6 open reading frame 17
Alias_symbol (synonym)SPR1
Other alias
HGNC (Hugo) PSORS1C2
LocusID (NCBI) 170680
Atlas_Id 72360
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31137534 and ends at 31139350 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSORS1C2   17199
Cards
Entrez_Gene (NCBI)PSORS1C2  170680  psoriasis susceptibility 1 candidate 2
AliasesC6orf17; SPR1
GeneCards (Weizmann)PSORS1C2
Ensembl hg19 (Hinxton)ENSG00000204538 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204538 [Gene_View]  ENSG00000204538 [Sequence]  chr6:31137534-31139350 [Contig_View]  PSORS1C2 [Vega]
ICGC DataPortalENSG00000204538
TCGA cBioPortalPSORS1C2
AceView (NCBI)PSORS1C2
Genatlas (Paris)PSORS1C2
WikiGenes170680
SOURCE (Princeton)PSORS1C2
Genetics Home Reference (NIH)PSORS1C2
Genomic and cartography
GoldenPath hg38 (UCSC)PSORS1C2  -     chr6:31137534-31139350 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSORS1C2  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblPSORS1C2 - 6p21.33 [CytoView hg19]  PSORS1C2 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIPSORS1C2 [Mapview hg19]  PSORS1C2 [Mapview hg38]
OMIM613526   
Gene and transcription
Genbank (Entrez)AB031480 AF484420 BC172314
RefSeq transcript (Entrez)NM_014069
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_021348 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248
Consensus coding sequences : CCDS (NCBI)PSORS1C2
Cluster EST : UnigeneHs.146824 [ NCBI ]
CGAP (NCI)Hs.146824
Alternative Splicing GalleryENSG00000204538
Gene ExpressionPSORS1C2 [ NCBI-GEO ]   PSORS1C2 [ EBI - ARRAY_EXPRESS ]   PSORS1C2 [ SEEK ]   PSORS1C2 [ MEM ]
Gene Expression Viewer (FireBrowse)PSORS1C2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170680
GTEX Portal (Tissue expression)PSORS1C2
Human Protein AtlasENSG00000204538-PSORS1C2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIG4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIG4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIG4
Splice isoforms : SwissVarQ9UIG4
PhosPhoSitePlusQ9UIG4
Domains : Interpro (EBI)SPR1   
Domain families : Pfam (Sanger)SPR1 (PF15356)   
Domain families : Pfam (NCBI)pfam15356   
Conserved Domain (NCBI)PSORS1C2
DMDM Disease mutations170680
Blocks (Seattle)PSORS1C2
SuperfamilyQ9UIG4
Human Protein Atlas [tissue]ENSG00000204538-PSORS1C2 [tissue]
Peptide AtlasQ9UIG4
HPRD17921
IPIIPI00022380   IPI00965822   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIG4
IntAct (EBI)Q9UIG4
FunCoupENSG00000204538
BioGRIDPSORS1C2
STRING (EMBL)PSORS1C2
ZODIACPSORS1C2
Ontologies - Pathways
QuickGOQ9UIG4
Ontology : AmiGOmolecular_function  cellular_component  extracellular region  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  extracellular region  biological_process  
NDEx NetworkPSORS1C2
Atlas of Cancer Signalling NetworkPSORS1C2
Wikipedia pathwaysPSORS1C2
Orthology - Evolution
OrthoDB170680
GeneTree (enSembl)ENSG00000204538
Phylogenetic Trees/Animal Genes : TreeFamPSORS1C2
HOVERGENQ9UIG4
HOGENOMQ9UIG4
Homologs : HomoloGenePSORS1C2
Homology/Alignments : Family Browser (UCSC)PSORS1C2
Gene fusions - Rearrangements
Fusion : QuiverPSORS1C2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSORS1C2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSORS1C2
dbVarPSORS1C2
ClinVarPSORS1C2
1000_GenomesPSORS1C2 
Exome Variant ServerPSORS1C2
ExAC (Exome Aggregation Consortium)ENSG00000204538
GNOMAD BrowserENSG00000204538
Varsome BrowserPSORS1C2
Genetic variants : HAPMAP170680
Genomic Variants (DGV)PSORS1C2 [DGVbeta]
DECIPHERPSORS1C2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSORS1C2 
Mutations
ICGC Data PortalPSORS1C2 
TCGA Data PortalPSORS1C2 
Broad Tumor PortalPSORS1C2
OASIS PortalPSORS1C2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSORS1C2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSORS1C2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSORS1C2
DgiDB (Drug Gene Interaction Database)PSORS1C2
DoCM (Curated mutations)PSORS1C2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSORS1C2 (select a term)
intoGenPSORS1C2
Cancer3DPSORS1C2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613526   
Orphanet
DisGeNETPSORS1C2
MedgenPSORS1C2
Genetic Testing Registry PSORS1C2
NextProtQ9UIG4 [Medical]
TSGene170680
GENETestsPSORS1C2
Target ValidationPSORS1C2
Huge Navigator PSORS1C2 [HugePedia]
snp3D : Map Gene to Disease170680
BioCentury BCIQPSORS1C2
ClinGenPSORS1C2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170680
Chemical/Pharm GKB GenePA33920
Clinical trialPSORS1C2
Miscellaneous
canSAR (ICR)PSORS1C2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSORS1C2
EVEXPSORS1C2
GoPubMedPSORS1C2
iHOPPSORS1C2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:25:33 CEST 2018

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