Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PSORS1C3 (psoriasis susceptibility 1 candidate 3 (non-protein coding))

Identity

Alias_namespsoriasis susceptibility 1 candidate 3
Alias_symbol (synonym)NCRNA00196
Other alias
HGNC (Hugo) PSORS1C3
LocusID (NCBI) 100130889
Atlas_Id 72361
Location 6_GL000256v2_alt  [Link to chromosome band 6]
Location_base_pair Starts at 2477166 and ends at 2481332 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSORS1C3   17203
Cards
Entrez_Gene (NCBI)PSORS1C3  100130889  psoriasis susceptibility 1 candidate 3 (non-protein coding)
AliasesNCRNA00196
GeneCards (Weizmann)PSORS1C3
Ensembl hg19 (Hinxton)ENSG00000204528 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204528 [Gene_View]  chr6_GL000256v2_alt:2477166-2481332 [Contig_View]  PSORS1C3 [Vega]
ICGC DataPortalENSG00000204528
TCGA cBioPortalPSORS1C3
AceView (NCBI)PSORS1C3
Genatlas (Paris)PSORS1C3
WikiGenes100130889
SOURCE (Princeton)PSORS1C3
Genetics Home Reference (NIH)PSORS1C3
Genomic and cartography
GoldenPath hg38 (UCSC)PSORS1C3  -     chr6_GL000256v2_alt:2477166-2481332 -  6_GL000256v2_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSORS1C3  -     6_GL000256v2_alt   [Description]    (hg19-Feb_2009)
EnsemblPSORS1C3 - 6_GL000256v2_alt [CytoView hg19]  PSORS1C3 - 6_GL000256v2_alt [CytoView hg38]
Mapping of homologs : NCBIPSORS1C3 [Mapview hg19]  PSORS1C3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB932952 AB932953 AB932954 AB933312 AB933313
RefSeq transcript (Entrez)NM_001134284
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)PSORS1C3
Cluster EST : UnigeneHs.670091 [ NCBI ]
CGAP (NCI)Hs.670091
Alternative Splicing GalleryENSG00000204528
Gene ExpressionPSORS1C3 [ NCBI-GEO ]   PSORS1C3 [ EBI - ARRAY_EXPRESS ]   PSORS1C3 [ SEEK ]   PSORS1C3 [ MEM ]
Gene Expression Viewer (FireBrowse)PSORS1C3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100130889
GTEX Portal (Tissue expression)PSORS1C3
Human Protein AtlasENSG00000204528-PSORS1C3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PSORS1C3
DMDM Disease mutations100130889
Blocks (Seattle)PSORS1C3
Human Protein Atlas [tissue]ENSG00000204528-PSORS1C3 [tissue]
Protein Interaction databases
FunCoupENSG00000204528
BioGRIDPSORS1C3
STRING (EMBL)PSORS1C3
ZODIACPSORS1C3
Ontologies - Pathways
Huge Navigator PSORS1C3 [HugePedia]
snp3D : Map Gene to Disease100130889
BioCentury BCIQPSORS1C3
ClinGenPSORS1C3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130889
Chemical/Pharm GKB GenePA33921
Clinical trialPSORS1C3
Miscellaneous
canSAR (ICR)PSORS1C3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSORS1C3
EVEXPSORS1C3
GoPubMedPSORS1C3
iHOPPSORS1C3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:15:02 CET 2017

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