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PSPHP1 (phosphoserine phosphatase pseudogene 1)

Identity

Alias_namesPSPHL
phosphoserine phosphatase-like
Alias_symbol (synonym)CO9
Other alias
HGNC (Hugo) PSPHP1
LocusID (NCBI) 8781
Atlas_Id 54893
Location 7p11.2  [Link to chromosome band 7p11]
Location_base_pair Starts at 55840873 and ends at 55841376 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EGFR (7p11.2) / PSPHP1 (7p11.2)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PSPHP1   9578
Cards
Entrez_Gene (NCBI)PSPHP1  8781  phosphoserine phosphatase pseudogene 1
AliasesCO9; PSPHL
GeneCards (Weizmann)PSPHP1
Ensembl hg19 (Hinxton) [Gene_View]  chr7:55840873-55841376 [Contig_View]  PSPHP1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:55840873-55841376 [Contig_View]  PSPHP1 [Vega]
TCGA cBioPortalPSPHP1
AceView (NCBI)PSPHP1
Genatlas (Paris)PSPHP1
WikiGenes8781
SOURCE (Princeton)PSPHP1
Genetics Home Reference (NIH)PSPHP1
Genomic and cartography
GoldenPath hg19 (UCSC)PSPHP1  -     chr7:55840873-55841376 +  7p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PSPHP1  -     7p11.2   [Description]    (hg38-Dec_2013)
EnsemblPSPHP1 - 7p11.2 [CytoView hg19]  PSPHP1 - 7p11.2 [CytoView hg38]
Mapping of homologs : NCBIPSPHP1 [Mapview hg19]  PSPHP1 [Mapview hg38]
OMIM604239   
Gene and transcription
Genbank (Entrez)AJ001612 BC065228
RefSeq transcript (Entrez)NM_003832
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_009001 NT_007819 NW_004929330
Consensus coding sequences : CCDS (NCBI)PSPHP1
Gene ExpressionPSPHP1 [ NCBI-GEO ]   PSPHP1 [ EBI - ARRAY_EXPRESS ]   PSPHP1 [ SEEK ]   PSPHP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PSPHP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8781
GTEX Portal (Tissue expression)PSPHP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15172   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15172  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15172
Splice isoforms : SwissVarO15172
PhosPhoSitePlusO15172
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PSPHP1
DMDM Disease mutations8781
Blocks (Seattle)PSPHP1
SuperfamilyO15172
Peptide AtlasO15172
IPIIPI00384175   
Protein Interaction databases
DIP (DOE-UCLA)O15172
IntAct (EBI)O15172
BioGRIDPSPHP1
STRING (EMBL)PSPHP1
ZODIACPSPHP1
Ontologies - Pathways
QuickGOO15172
Ontology : AmiGOphosphoserine phosphatase activity  cell proliferation  dephosphorylation  
Ontology : EGO-EBIphosphoserine phosphatase activity  cell proliferation  dephosphorylation  
NDEx NetworkPSPHP1
Atlas of Cancer Signalling NetworkPSPHP1
Wikipedia pathwaysPSPHP1
Orthology - Evolution
OrthoDB8781
Phylogenetic Trees/Animal Genes : TreeFamPSPHP1
HOVERGENO15172
HOGENOMO15172
Homologs : HomoloGenePSPHP1
Homology/Alignments : Family Browser (UCSC)PSPHP1
Gene fusions - Rearrangements
Fusion : MitelmanEGFR/PSPHP1 [7p11.2/7p11.2]  [t(7;7)(p11;p11)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSPHP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSPHP1
dbVarPSPHP1
ClinVarPSPHP1
1000_GenomesPSPHP1 
Exome Variant ServerPSPHP1
ExAC (Exome Aggregation Consortium)PSPHP1 (select the gene name)
Genetic variants : HAPMAP8781
Genomic Variants (DGV)PSPHP1 [DGVbeta]
DECIPHER (Syndromes)7:55840873-55841376  
CONAN: Copy Number AnalysisPSPHP1 
Mutations
ICGC Data PortalPSPHP1 
TCGA Data PortalPSPHP1 
Broad Tumor PortalPSPHP1
OASIS PortalPSPHP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPSPHP1
BioMutasearch PSPHP1
DgiDB (Drug Gene Interaction Database)PSPHP1
DoCM (Curated mutations)PSPHP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSPHP1 (select a term)
intoGenPSPHP1
Cancer3DPSPHP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604239   
Orphanet
MedgenPSPHP1
Genetic Testing Registry PSPHP1
NextProtO15172 [Medical]
TSGene8781
GENETestsPSPHP1
Huge Navigator PSPHP1 [HugePedia]
snp3D : Map Gene to Disease8781
BioCentury BCIQPSPHP1
ClinGenPSPHP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8781
Chemical/Pharm GKB GenePA33929
Clinical trialPSPHP1
Miscellaneous
canSAR (ICR)PSPHP1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSPHP1
EVEXPSPHP1
GoPubMedPSPHP1
iHOPPSPHP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:23:27 CET 2017

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