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PSPN (persephin)

Identity

Alias (NCBI)PSP
HGNC (Hugo) PSPN
HGNC Alias symbPSP
LocusID (NCBI) 5623
Atlas_Id 55497
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 6375148 and ends at 6375916 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GTF2F1 (19p13.3) / PSPN (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PSPN   9579
Cards
Entrez_Gene (NCBI)PSPN    persephin
AliasesPSP
GeneCards (Weizmann)PSPN
Ensembl hg19 (Hinxton)ENSG00000125650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125650 [Gene_View]  ENSG00000125650 [Sequence]  chr19:6375148-6375916 [Contig_View]  PSPN [Vega]
ICGC DataPortalENSG00000125650
TCGA cBioPortalPSPN
AceView (NCBI)PSPN
Genatlas (Paris)PSPN
SOURCE (Princeton)PSPN
Genetics Home Reference (NIH)PSPN
Genomic and cartography
GoldenPath hg38 (UCSC)PSPN  -     chr19:6375148-6375916 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSPN  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathPSPN - 19p13.3 [CytoView hg19]  PSPN - 19p13.3 [CytoView hg38]
ImmunoBaseENSG00000125650
Genome Data Viewer NCBIPSPN [Mapview hg19]  
OMIM602921   
Gene and transcription
Genbank (Entrez)AF040962 AK055490 BC143894 BU609071
RefSeq transcript (Entrez)NM_004158
Consensus coding sequences : CCDS (NCBI)PSPN
Gene ExpressionPSPN [ NCBI-GEO ]   PSPN [ EBI - ARRAY_EXPRESS ]   PSPN [ SEEK ]   PSPN [ MEM ]
Gene Expression Viewer (FireBrowse)PSPN [ Firebrowse - Broad ]
GenevisibleExpression of PSPN in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5623
GTEX Portal (Tissue expression)PSPN
Human Protein AtlasENSG00000125650-PSPN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60542   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60542  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60542
PhosPhoSitePlusO60542
Domaine pattern : Prosite (Expaxy)TGF_BETA_2 (PS51362)   
Domains : Interpro (EBI)Cystine-knot_cytokine    GDNF_fam    TGF-b_C   
Domain families : Pfam (Sanger)TGF_beta (PF00019)   
Domain families : Pfam (NCBI)pfam00019   
Domain families : Smart (EMBL)TGFB (SM00204)  
Conserved Domain (NCBI)PSPN
SuperfamilyO60542
AlphaFold pdb e-kbO60542   
Human Protein Atlas [tissue]ENSG00000125650-PSPN [tissue]
HPRD04230
Protein Interaction databases
DIP (DOE-UCLA)O60542
IntAct (EBI)O60542
BioGRIDPSPN
STRING (EMBL)PSPN
ZODIACPSPN
Ontologies - Pathways
QuickGOO60542
Ontology : AmiGOMAPK cascade  signaling receptor binding  extracellular region  extracellular space  nervous system development  axon guidance  central nervous system development  growth factor activity  glial cell-derived neurotrophic factor receptor binding  receptor tyrosine kinase binding  
Ontology : EGO-EBIMAPK cascade  signaling receptor binding  extracellular region  extracellular space  nervous system development  axon guidance  central nervous system development  growth factor activity  glial cell-derived neurotrophic factor receptor binding  receptor tyrosine kinase binding  
NDEx NetworkPSPN
Atlas of Cancer Signalling NetworkPSPN
Wikipedia pathwaysPSPN
Orthology - Evolution
OrthoDB5623
GeneTree (enSembl)ENSG00000125650
Phylogenetic Trees/Animal Genes : TreeFamPSPN
Homologs : HomoloGenePSPN
Homology/Alignments : Family Browser (UCSC)PSPN
Gene fusions - Rearrangements
Fusion : QuiverPSPN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSPN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSPN
dbVarPSPN
ClinVarPSPN
MonarchPSPN
1000_GenomesPSPN 
Exome Variant ServerPSPN
GNOMAD BrowserENSG00000125650
Varsome BrowserPSPN
ACMGPSPN variants
VarityO60542
Genomic Variants (DGV)PSPN [DGVbeta]
DECIPHERPSPN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSPN 
Mutations
ICGC Data PortalPSPN 
TCGA Data PortalPSPN 
Broad Tumor PortalPSPN
OASIS PortalPSPN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSPN  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPSPN
Mutations and Diseases : HGMDPSPN
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPSPN
DgiDB (Drug Gene Interaction Database)PSPN
DoCM (Curated mutations)PSPN
CIViC (Clinical Interpretations of Variants in Cancer)PSPN
Cancer3DPSPN
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602921   
Orphanet
DisGeNETPSPN
MedgenPSPN
Genetic Testing Registry PSPN
NextProtO60542 [Medical]
GENETestsPSPN
Target ValidationPSPN
Huge Navigator PSPN [HugePedia]
ClinGenPSPN
Clinical trials, drugs, therapy
MyCancerGenomePSPN
Protein Interactions : CTDPSPN
Pharm GKB GenePA33930
PharosO60542
Clinical trialPSPN
Miscellaneous
canSAR (ICR)PSPN
HarmonizomePSPN
DataMed IndexPSPN
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPSPN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:27:20 CEST 2021

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