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PSTK (phosphoseryl-tRNA kinase)

Identity

Alias_namesC10orf89
chromosome 10 open reading frame 89
Alias_symbol (synonym)MGC35392
Other alias
HGNC (Hugo) PSTK
LocusID (NCBI) 118672
Atlas_Id 72363
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 124739556 and ends at 124749907 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C10orf88 (10q26.13) / PSTK (10q26.13)PSTK (10q26.13) / SLCO1A2 (12p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSTK   28578
Cards
Entrez_Gene (NCBI)PSTK  118672  phosphoseryl-tRNA kinase
AliasesC10orf89
GeneCards (Weizmann)PSTK
Ensembl hg19 (Hinxton)ENSG00000179988 [Gene_View]  chr10:124739556-124749907 [Contig_View]  PSTK [Vega]
Ensembl hg38 (Hinxton)ENSG00000179988 [Gene_View]  chr10:124739556-124749907 [Contig_View]  PSTK [Vega]
ICGC DataPortalENSG00000179988
TCGA cBioPortalPSTK
AceView (NCBI)PSTK
Genatlas (Paris)PSTK
WikiGenes118672
SOURCE (Princeton)PSTK
Genetics Home Reference (NIH)PSTK
Genomic and cartography
GoldenPath hg19 (UCSC)PSTK  -     chr10:124739556-124749907 +  10q26.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PSTK  -     10q26.13   [Description]    (hg38-Dec_2013)
EnsemblPSTK - 10q26.13 [CytoView hg19]  PSTK - 10q26.13 [CytoView hg38]
Mapping of homologs : NCBIPSTK [Mapview hg19]  PSTK [Mapview hg38]
OMIM611310   
Gene and transcription
Genbank (Entrez)AK094271 AK127173 AL833506 BC035344 JF432872
RefSeq transcript (Entrez)NM_153336
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)PSTK
Cluster EST : UnigeneHs.281004 [ NCBI ]
CGAP (NCI)Hs.281004
Alternative Splicing GalleryENSG00000179988
Gene ExpressionPSTK [ NCBI-GEO ]   PSTK [ EBI - ARRAY_EXPRESS ]   PSTK [ SEEK ]   PSTK [ MEM ]
Gene Expression Viewer (FireBrowse)PSTK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118672
GTEX Portal (Tissue expression)PSTK
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV42
Splice isoforms : SwissVarQ8IV42
Catalytic activity : Enzyme2.7.1.164 [ Enzyme-Expasy ]   2.7.1.1642.7.1.164 [ IntEnz-EBI ]   2.7.1.164 [ BRENDA ]   2.7.1.164 [ KEGG ]   
PhosPhoSitePlusQ8IV42
Domains : Interpro (EBI)Chromatin_KTI12    L-seryl-tRNA_Sec_kinase_euk    P-loop_NTPase   
Domain families : Pfam (Sanger)KTI12 (PF08433)   
Domain families : Pfam (NCBI)pfam08433   
Conserved Domain (NCBI)PSTK
DMDM Disease mutations118672
Blocks (Seattle)PSTK
SuperfamilyQ8IV42
Human Protein AtlasENSG00000179988
Peptide AtlasQ8IV42
HPRD16586
IPIIPI00216866   IPI00444683   IPI00952877   IPI00644057   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV42
IntAct (EBI)Q8IV42
FunCoupENSG00000179988
BioGRIDPSTK
STRING (EMBL)PSTK
ZODIACPSTK
Ontologies - Pathways
QuickGOQ8IV42
Ontology : AmiGOtRNA binding  selenocysteine incorporation  ATP binding  mitochondrion  kinase activity  phosphorylation  selenocysteinyl-tRNA(Sec) biosynthetic process  
Ontology : EGO-EBItRNA binding  selenocysteine incorporation  ATP binding  mitochondrion  kinase activity  phosphorylation  selenocysteinyl-tRNA(Sec) biosynthetic process  
Pathways : KEGGSelenocompound metabolism    Aminoacyl-tRNA biosynthesis   
NDEx NetworkPSTK
Atlas of Cancer Signalling NetworkPSTK
Wikipedia pathwaysPSTK
Orthology - Evolution
OrthoDB118672
GeneTree (enSembl)ENSG00000179988
Phylogenetic Trees/Animal Genes : TreeFamPSTK
HOVERGENQ8IV42
HOGENOMQ8IV42
Homologs : HomoloGenePSTK
Homology/Alignments : Family Browser (UCSC)PSTK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSTK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSTK
dbVarPSTK
ClinVarPSTK
1000_GenomesPSTK 
Exome Variant ServerPSTK
ExAC (Exome Aggregation Consortium)PSTK (select the gene name)
Genetic variants : HAPMAP118672
Genomic Variants (DGV)PSTK [DGVbeta]
DECIPHER (Syndromes)10:124739556-124749907  ENSG00000179988
CONAN: Copy Number AnalysisPSTK 
Mutations
ICGC Data PortalPSTK 
TCGA Data PortalPSTK 
Broad Tumor PortalPSTK
OASIS PortalPSTK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSTK  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSTK
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSTK
DgiDB (Drug Gene Interaction Database)PSTK
DoCM (Curated mutations)PSTK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSTK (select a term)
intoGenPSTK
Cancer3DPSTK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611310   
Orphanet
MedgenPSTK
Genetic Testing Registry PSTK
NextProtQ8IV42 [Medical]
TSGene118672
GENETestsPSTK
Huge Navigator PSTK [HugePedia]
snp3D : Map Gene to Disease118672
BioCentury BCIQPSTK
ClinGenPSTK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118672
Chemical/Pharm GKB GenePA162400268
Clinical trialPSTK
Miscellaneous
canSAR (ICR)PSTK (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSTK
EVEXPSTK
GoPubMedPSTK
iHOPPSTK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:07 CET 2017

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