Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PSTPIP1 (proline-serine-threonine phosphatase interacting protein 1)

Identity

Other aliasCD2BP1
CD2BP1L
CD2BP1S
H-PIP
PAPAS
PSTPIP
HGNC (Hugo) PSTPIP1
LocusID (NCBI) 9051
Atlas_Id 56759
Location 15q24.3  [Link to chromosome band 15q24]
Location_base_pair Starts at 76995085 and ends at 77037475 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSTPIP1   9580
Cards
Entrez_Gene (NCBI)PSTPIP1  9051  proline-serine-threonine phosphatase interacting protein 1
AliasesCD2BP1; CD2BP1L; CD2BP1S; H-PIP; 
PAPAS; PSTPIP
GeneCards (Weizmann)PSTPIP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:76995085-77037475 [Contig_View]  PSTPIP1 [Vega]
TCGA cBioPortalPSTPIP1
AceView (NCBI)PSTPIP1
Genatlas (Paris)PSTPIP1
WikiGenes9051
SOURCE (Princeton)PSTPIP1
Genetics Home Reference (NIH)PSTPIP1
Genomic and cartography
GoldenPath hg38 (UCSC)PSTPIP1  -     chr15:76995085-77037475 +  15q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSTPIP1  -     15q24.3   [Description]    (hg19-Feb_2009)
EnsemblPSTPIP1 - 15q24.3 [CytoView hg19]  PSTPIP1 - 15q24.3 [CytoView hg38]
Mapping of homologs : NCBIPSTPIP1 [Mapview hg19]  PSTPIP1 [Mapview hg38]
OMIM604416   606347   
Gene and transcription
Genbank (Entrez)AB451310 AB451440 AF038602 AF038603 AK298733
RefSeq transcript (Entrez)NM_001321135 NM_001321136 NM_001321137 NM_003978
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSTPIP1
Cluster EST : UnigeneHs.129758 [ NCBI ]
CGAP (NCI)Hs.129758
Gene ExpressionPSTPIP1 [ NCBI-GEO ]   PSTPIP1 [ EBI - ARRAY_EXPRESS ]   PSTPIP1 [ SEEK ]   PSTPIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PSTPIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9051
GTEX Portal (Tissue expression)PSTPIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43586   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43586  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43586
Splice isoforms : SwissVarO43586
PhosPhoSitePlusO43586
Domaine pattern : Prosite (Expaxy)F_BAR (PS51741)    SH3 (PS50002)   
Domains : Interpro (EBI)F_BAR    FCH_dom    PSTPIP1    SH3_domain    Spectrin_alpha_SH3   
Domain families : Pfam (Sanger)FCH (PF00611)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam00611    pfam14604   
Domain families : Smart (EMBL)FCH (SM00055)  SH3 (SM00326)  
Conserved Domain (NCBI)PSTPIP1
DMDM Disease mutations9051
Blocks (Seattle)PSTPIP1
PDB (SRS)2DIL   
PDB (PDBSum)2DIL   
PDB (IMB)2DIL   
PDB (RSDB)2DIL   
Structural Biology KnowledgeBase2DIL   
SCOP (Structural Classification of Proteins)2DIL   
CATH (Classification of proteins structures)2DIL   
SuperfamilyO43586
Peptide AtlasO43586
IPIIPI00022606   IPI00643697   IPI00909068   IPI01018137   
Protein Interaction databases
DIP (DOE-UCLA)O43586
IntAct (EBI)O43586
BioGRIDPSTPIP1
STRING (EMBL)PSTPIP1
ZODIACPSTPIP1
Ontologies - Pathways
QuickGOO43586
Ontology : AmiGOuropod  protein binding  cytosol  cytoskeleton  plasma membrane  endocytosis  inflammatory response  cell adhesion  signal transduction  membrane  lamellipodium  cleavage furrow  innate immune response  perinuclear region of cytoplasm  
Ontology : EGO-EBIuropod  protein binding  cytosol  cytoskeleton  plasma membrane  endocytosis  inflammatory response  cell adhesion  signal transduction  membrane  lamellipodium  cleavage furrow  innate immune response  perinuclear region of cytoplasm  
Pathways : KEGGNOD-like receptor signaling pathway   
NDEx NetworkPSTPIP1
Atlas of Cancer Signalling NetworkPSTPIP1
Wikipedia pathwaysPSTPIP1
Orthology - Evolution
OrthoDB9051
Phylogenetic Trees/Animal Genes : TreeFamPSTPIP1
HOVERGENO43586
HOGENOMO43586
Homologs : HomoloGenePSTPIP1
Homology/Alignments : Family Browser (UCSC)PSTPIP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSTPIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSTPIP1
dbVarPSTPIP1
ClinVarPSTPIP1
1000_GenomesPSTPIP1 
Exome Variant ServerPSTPIP1
ExAC (Exome Aggregation Consortium)PSTPIP1 (select the gene name)
Genetic variants : HAPMAP9051
Genomic Variants (DGV)PSTPIP1 [DGVbeta]
DECIPHERPSTPIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSTPIP1 
Mutations
ICGC Data PortalPSTPIP1 
TCGA Data PortalPSTPIP1 
Broad Tumor PortalPSTPIP1
OASIS PortalPSTPIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSTPIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSTPIP1
BioMutasearch PSTPIP1
DgiDB (Drug Gene Interaction Database)PSTPIP1
DoCM (Curated mutations)PSTPIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSTPIP1 (select a term)
intoGenPSTPIP1
Cancer3DPSTPIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604416    606347   
Orphanet
MedgenPSTPIP1
Genetic Testing Registry PSTPIP1
NextProtO43586 [Medical]
TSGene9051
GENETestsPSTPIP1
Target ValidationPSTPIP1
Huge Navigator PSTPIP1 [HugePedia]
snp3D : Map Gene to Disease9051
BioCentury BCIQPSTPIP1
ClinGenPSTPIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9051
Chemical/Pharm GKB GenePA33931
Clinical trialPSTPIP1
Miscellaneous
canSAR (ICR)PSTPIP1 (select the gene name)
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSTPIP1
EVEXPSTPIP1
GoPubMedPSTPIP1
iHOPPSTPIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:04:43 CEST 2017

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