Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PSTPIP1 (proline-serine-threonine phosphatase interacting protein 1)

Identity

Alias_symbol (synonym)PSTPIP
CD2BP1L
CD2BP1
CD2BP1S
H-PIP
PAPAS
Other alias
HGNC (Hugo) PSTPIP1
LocusID (NCBI) 9051
Atlas_Id 72364
Location 15q24.3  [Link to chromosome band 15q24]
Location_base_pair Starts at 77287465 and ends at 77329671 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSTPIP1   9580
LRG (Locus Reference Genomic)LRG_172
Cards
Entrez_Gene (NCBI)PSTPIP1  9051  proline-serine-threonine phosphatase interacting protein 1
AliasesCD2BP1; CD2BP1L; CD2BP1S; H-PIP; 
PAPAS; PSTPIP
GeneCards (Weizmann)PSTPIP1
Ensembl hg19 (Hinxton)ENSG00000140368 [Gene_View]  chr15:77287465-77329671 [Contig_View]  PSTPIP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000140368 [Gene_View]  chr15:77287465-77329671 [Contig_View]  PSTPIP1 [Vega]
ICGC DataPortalENSG00000140368
TCGA cBioPortalPSTPIP1
AceView (NCBI)PSTPIP1
Genatlas (Paris)PSTPIP1
WikiGenes9051
SOURCE (Princeton)PSTPIP1
Genetics Home Reference (NIH)PSTPIP1
Genomic and cartography
GoldenPath hg19 (UCSC)PSTPIP1  -     chr15:77287465-77329671 +  15q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PSTPIP1  -     15q24.3   [Description]    (hg38-Dec_2013)
EnsemblPSTPIP1 - 15q24.3 [CytoView hg19]  PSTPIP1 - 15q24.3 [CytoView hg38]
Mapping of homologs : NCBIPSTPIP1 [Mapview hg19]  PSTPIP1 [Mapview hg38]
OMIM604416   606347   
Gene and transcription
Genbank (Entrez)AB451310 AB451440 AF038602 AF038603 AK298733
RefSeq transcript (Entrez)NM_003978
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_007526 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)PSTPIP1
Cluster EST : UnigeneHs.129758 [ NCBI ]
CGAP (NCI)Hs.129758
Alternative Splicing GalleryENSG00000140368
Gene ExpressionPSTPIP1 [ NCBI-GEO ]   PSTPIP1 [ EBI - ARRAY_EXPRESS ]   PSTPIP1 [ SEEK ]   PSTPIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PSTPIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9051
GTEX Portal (Tissue expression)PSTPIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43586   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43586  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43586
Splice isoforms : SwissVarO43586
PhosPhoSitePlusO43586
Domaine pattern : Prosite (Expaxy)F_BAR (PS51741)    SH3 (PS50002)   
Domains : Interpro (EBI)FCH_dom    PSTPIP1    SH3_domain    Spectrin_alpha_SH3   
Domain families : Pfam (Sanger)FCH (PF00611)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam00611    pfam14604   
Domain families : Smart (EMBL)FCH (SM00055)  SH3 (SM00326)  
Conserved Domain (NCBI)PSTPIP1
DMDM Disease mutations9051
Blocks (Seattle)PSTPIP1
PDB (SRS)2DIL   
PDB (PDBSum)2DIL   
PDB (IMB)2DIL   
PDB (RSDB)2DIL   
Structural Biology KnowledgeBase2DIL   
SCOP (Structural Classification of Proteins)2DIL   
CATH (Classification of proteins structures)2DIL   
SuperfamilyO43586
Human Protein AtlasENSG00000140368
Peptide AtlasO43586
HPRD05891
IPIIPI00022606   IPI00643697   IPI00909068   IPI01018137   
Protein Interaction databases
DIP (DOE-UCLA)O43586
IntAct (EBI)O43586
FunCoupENSG00000140368
BioGRIDPSTPIP1
STRING (EMBL)PSTPIP1
ZODIACPSTPIP1
Ontologies - Pathways
QuickGOO43586
Ontology : AmiGOstress fiber  uropod  actin binding  protein binding  actomyosin contractile ring  cytosol  endocytosis  inflammatory response  cell adhesion  signal transduction  membrane  cell migration  protein phosphatase binding  lamellipodium  cleavage furrow  nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway  innate immune response  perinuclear region of cytoplasm  
Ontology : EGO-EBIstress fiber  uropod  actin binding  protein binding  actomyosin contractile ring  cytosol  endocytosis  inflammatory response  cell adhesion  signal transduction  membrane  cell migration  protein phosphatase binding  lamellipodium  cleavage furrow  nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway  innate immune response  perinuclear region of cytoplasm  
Pathways : KEGGNOD-like receptor signaling pathway   
NDEx NetworkPSTPIP1
Atlas of Cancer Signalling NetworkPSTPIP1
Wikipedia pathwaysPSTPIP1
Orthology - Evolution
OrthoDB9051
GeneTree (enSembl)ENSG00000140368
Phylogenetic Trees/Animal Genes : TreeFamPSTPIP1
HOVERGENO43586
HOGENOMO43586
Homologs : HomoloGenePSTPIP1
Homology/Alignments : Family Browser (UCSC)PSTPIP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSTPIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSTPIP1
dbVarPSTPIP1
ClinVarPSTPIP1
1000_GenomesPSTPIP1 
Exome Variant ServerPSTPIP1
ExAC (Exome Aggregation Consortium)PSTPIP1 (select the gene name)
Genetic variants : HAPMAP9051
Genomic Variants (DGV)PSTPIP1 [DGVbeta]
DECIPHER (Syndromes)15:77287465-77329671  ENSG00000140368
CONAN: Copy Number AnalysisPSTPIP1 
Mutations
ICGC Data PortalPSTPIP1 
TCGA Data PortalPSTPIP1 
Broad Tumor PortalPSTPIP1
OASIS PortalPSTPIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSTPIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSTPIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch PSTPIP1
DgiDB (Drug Gene Interaction Database)PSTPIP1
DoCM (Curated mutations)PSTPIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSTPIP1 (select a term)
intoGenPSTPIP1
Cancer3DPSTPIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604416    606347   
Orphanet10924   
MedgenPSTPIP1
Genetic Testing Registry PSTPIP1
NextProtO43586 [Medical]
TSGene9051
GENETestsPSTPIP1
Huge Navigator PSTPIP1 [HugePedia]
snp3D : Map Gene to Disease9051
BioCentury BCIQPSTPIP1
ClinGenPSTPIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9051
Chemical/Pharm GKB GenePA33931
Clinical trialPSTPIP1
Miscellaneous
canSAR (ICR)PSTPIP1 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSTPIP1
EVEXPSTPIP1
GoPubMedPSTPIP1
iHOPPSTPIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:40:07 CET 2017

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