Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PSTPIP2 (proline-serine-threonine phosphatase interacting protein 2)

Identity

Other aliasMAYP
HGNC (Hugo) PSTPIP2
LocusID (NCBI) 9050
Atlas_Id 47394
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 45983536 and ends at 46072284 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CTIF (18q21.1) / PSTPIP2 (18q21.1)PSTPIP2 (18q21.1) / ARID4A (14q23.1)PSTPIP2 (18q21.1) / KMO (1q43)
CTIF 18q21.1 / PSTPIP2 18q21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PSTPIP2   9581
Cards
Entrez_Gene (NCBI)PSTPIP2  9050  proline-serine-threonine phosphatase interacting protein 2
AliasesMAYP
GeneCards (Weizmann)PSTPIP2
Ensembl hg19 (Hinxton)ENSG00000152229 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152229 [Gene_View]  chr18:45983536-46072284 [Contig_View]  PSTPIP2 [Vega]
ICGC DataPortalENSG00000152229
TCGA cBioPortalPSTPIP2
AceView (NCBI)PSTPIP2
Genatlas (Paris)PSTPIP2
WikiGenes9050
SOURCE (Princeton)PSTPIP2
Genetics Home Reference (NIH)PSTPIP2
Genomic and cartography
GoldenPath hg38 (UCSC)PSTPIP2  -     chr18:45983536-46072284 -  18q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PSTPIP2  -     18q21.1   [Description]    (hg19-Feb_2009)
EnsemblPSTPIP2 - 18q21.1 [CytoView hg19]  PSTPIP2 - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBIPSTPIP2 [Mapview hg19]  PSTPIP2 [Mapview hg38]
OMIM616046   
Gene and transcription
Genbank (Entrez)AK023100 BC026223 BC035395 BP352927 DA943980
RefSeq transcript (Entrez)NM_024430
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PSTPIP2
Cluster EST : UnigeneHs.567384 [ NCBI ]
CGAP (NCI)Hs.567384
Alternative Splicing GalleryENSG00000152229
Gene ExpressionPSTPIP2 [ NCBI-GEO ]   PSTPIP2 [ EBI - ARRAY_EXPRESS ]   PSTPIP2 [ SEEK ]   PSTPIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)PSTPIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9050
GTEX Portal (Tissue expression)PSTPIP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H939   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H939  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H939
Splice isoforms : SwissVarQ9H939
PhosPhoSitePlusQ9H939
Domaine pattern : Prosite (Expaxy)F_BAR (PS51741)   
Domains : Interpro (EBI)F_BAR    FCH_dom    PSTPIP2   
Domain families : Pfam (Sanger)FCH (PF00611)   
Domain families : Pfam (NCBI)pfam00611   
Domain families : Smart (EMBL)FCH (SM00055)  
Conserved Domain (NCBI)PSTPIP2
DMDM Disease mutations9050
Blocks (Seattle)PSTPIP2
SuperfamilyQ9H939
Human Protein AtlasENSG00000152229
Peptide AtlasQ9H939
HPRD06687
IPIIPI00016620   IPI00170554   
Protein Interaction databases
DIP (DOE-UCLA)Q9H939
IntAct (EBI)Q9H939
FunCoupENSG00000152229
BioGRIDPSTPIP2
STRING (EMBL)PSTPIP2
ZODIACPSTPIP2
Ontologies - Pathways
QuickGOQ9H939
Ontology : AmiGOactin binding  cytosol  cytoskeleton  cytoskeleton organization  membrane  cell migration  
Ontology : EGO-EBIactin binding  cytosol  cytoskeleton  cytoskeleton organization  membrane  cell migration  
NDEx NetworkPSTPIP2
Atlas of Cancer Signalling NetworkPSTPIP2
Wikipedia pathwaysPSTPIP2
Orthology - Evolution
OrthoDB9050
GeneTree (enSembl)ENSG00000152229
Phylogenetic Trees/Animal Genes : TreeFamPSTPIP2
HOVERGENQ9H939
HOGENOMQ9H939
Homologs : HomoloGenePSTPIP2
Homology/Alignments : Family Browser (UCSC)PSTPIP2
Gene fusions - Rearrangements
Fusion : MitelmanCTIF/PSTPIP2 [18q21.1/18q21.1]  [t(18;18)(q21;q21)]  
Fusion: TCGACTIF 18q21.1 PSTPIP2 18q21.1 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPSTPIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PSTPIP2
dbVarPSTPIP2
ClinVarPSTPIP2
1000_GenomesPSTPIP2 
Exome Variant ServerPSTPIP2
ExAC (Exome Aggregation Consortium)PSTPIP2 (select the gene name)
Genetic variants : HAPMAP9050
Genomic Variants (DGV)PSTPIP2 [DGVbeta]
DECIPHERPSTPIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPSTPIP2 
Mutations
ICGC Data PortalPSTPIP2 
TCGA Data PortalPSTPIP2 
Broad Tumor PortalPSTPIP2
OASIS PortalPSTPIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPSTPIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPSTPIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PSTPIP2
DgiDB (Drug Gene Interaction Database)PSTPIP2
DoCM (Curated mutations)PSTPIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PSTPIP2 (select a term)
intoGenPSTPIP2
Cancer3DPSTPIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616046   
Orphanet
MedgenPSTPIP2
Genetic Testing Registry PSTPIP2
NextProtQ9H939 [Medical]
TSGene9050
GENETestsPSTPIP2
Huge Navigator PSTPIP2 [HugePedia]
snp3D : Map Gene to Disease9050
BioCentury BCIQPSTPIP2
ClinGenPSTPIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9050
Chemical/Pharm GKB GenePA33932
Clinical trialPSTPIP2
Miscellaneous
canSAR (ICR)PSTPIP2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePSTPIP2
EVEXPSTPIP2
GoPubMedPSTPIP2
iHOPPSTPIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:33:20 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.