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PTAR1 (protein prenyltransferase alpha subunit repeat containing 1)

Identity

Other alias-
HGNC (Hugo) PTAR1
LocusID (NCBI) 375743
Atlas_Id 72365
Location 9q21.12  [Link to chromosome band 9q21]
Location_base_pair Starts at 69709522 and ends at 69759960 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PTAR1 (9q21.12) / PARD3 (10p11.22)PTAR1 (9q21.12) / PTAR1 (9q21.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTAR1   30449
Cards
Entrez_Gene (NCBI)PTAR1  375743  protein prenyltransferase alpha subunit repeat containing 1
Aliases
GeneCards (Weizmann)PTAR1
Ensembl hg19 (Hinxton)ENSG00000188647 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188647 [Gene_View]  chr9:69709522-69759960 [Contig_View]  PTAR1 [Vega]
ICGC DataPortalENSG00000188647
TCGA cBioPortalPTAR1
AceView (NCBI)PTAR1
Genatlas (Paris)PTAR1
WikiGenes375743
SOURCE (Princeton)PTAR1
Genetics Home Reference (NIH)PTAR1
Genomic and cartography
GoldenPath hg38 (UCSC)PTAR1  -     chr9:69709522-69759960 -  9q21.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTAR1  -     9q21.12   [Description]    (hg19-Feb_2009)
EnsemblPTAR1 - 9q21.12 [CytoView hg19]  PTAR1 - 9q21.12 [CytoView hg38]
Mapping of homologs : NCBIPTAR1 [Mapview hg19]  PTAR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI937926 AK127511 AL832683 BC053622 BM785278
RefSeq transcript (Entrez)NM_001099666
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PTAR1
Cluster EST : UnigeneHs.744192 [ NCBI ]
CGAP (NCI)Hs.744192
Alternative Splicing GalleryENSG00000188647
Gene ExpressionPTAR1 [ NCBI-GEO ]   PTAR1 [ EBI - ARRAY_EXPRESS ]   PTAR1 [ SEEK ]   PTAR1 [ MEM ]
Gene Expression Viewer (FireBrowse)PTAR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375743
GTEX Portal (Tissue expression)PTAR1
Human Protein AtlasENSG00000188647-PTAR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6K3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6K3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6K3
Splice isoforms : SwissVarQ7Z6K3
PhosPhoSitePlusQ7Z6K3
Domaine pattern : Prosite (Expaxy)PFTA (PS51147)   
Domains : Interpro (EBI)Prenyl_trans_a   
Domain families : Pfam (Sanger)PPTA (PF01239)   
Domain families : Pfam (NCBI)pfam01239   
Conserved Domain (NCBI)PTAR1
DMDM Disease mutations375743
Blocks (Seattle)PTAR1
SuperfamilyQ7Z6K3
Human Protein Atlas [tissue]ENSG00000188647-PTAR1 [tissue]
Peptide AtlasQ7Z6K3
IPIIPI00399115   IPI00646354   IPI01015566   IPI01015129   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6K3
IntAct (EBI)Q7Z6K3
FunCoupENSG00000188647
BioGRIDPTAR1
STRING (EMBL)PTAR1
ZODIACPTAR1
Ontologies - Pathways
QuickGOQ7Z6K3
Ontology : AmiGOprotein prenyltransferase activity  protein prenylation  
Ontology : EGO-EBIprotein prenyltransferase activity  protein prenylation  
NDEx NetworkPTAR1
Atlas of Cancer Signalling NetworkPTAR1
Wikipedia pathwaysPTAR1
Orthology - Evolution
OrthoDB375743
GeneTree (enSembl)ENSG00000188647
Phylogenetic Trees/Animal Genes : TreeFamPTAR1
HOVERGENQ7Z6K3
HOGENOMQ7Z6K3
Homologs : HomoloGenePTAR1
Homology/Alignments : Family Browser (UCSC)PTAR1
Gene fusions - Rearrangements
Fusion: Tumor Portal PTAR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTAR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTAR1
dbVarPTAR1
ClinVarPTAR1
1000_GenomesPTAR1 
Exome Variant ServerPTAR1
ExAC (Exome Aggregation Consortium)ENSG00000188647
GNOMAD BrowserENSG00000188647
Genetic variants : HAPMAP375743
Genomic Variants (DGV)PTAR1 [DGVbeta]
DECIPHERPTAR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPTAR1 
Mutations
ICGC Data PortalPTAR1 
TCGA Data PortalPTAR1 
Broad Tumor PortalPTAR1
OASIS PortalPTAR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTAR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTAR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTAR1
DgiDB (Drug Gene Interaction Database)PTAR1
DoCM (Curated mutations)PTAR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTAR1 (select a term)
intoGenPTAR1
Cancer3DPTAR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPTAR1
Genetic Testing Registry PTAR1
NextProtQ7Z6K3 [Medical]
TSGene375743
GENETestsPTAR1
Target ValidationPTAR1
Huge Navigator PTAR1 [HugePedia]
snp3D : Map Gene to Disease375743
BioCentury BCIQPTAR1
ClinGenPTAR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375743
Chemical/Pharm GKB GenePA134897041
Clinical trialPTAR1
Miscellaneous
canSAR (ICR)PTAR1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTAR1
EVEXPTAR1
GoPubMedPTAR1
iHOPPTAR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:24:01 CET 2017

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