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PTBP3 (polypyrimidine tract binding protein 3)

Identity

Alias_namesROD1
regulator of differentiation (in S. pombe) 1
ROD1 regulator of differentiation 1 (S. pombe)
Alias_symbol (synonym)DKFZp781I1117
Other alias
HGNC (Hugo) PTBP3
LocusID (NCBI) 9991
Atlas_Id 51015
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 112217715 and ends at 112333664 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PSMB7 (9q33.3) / PTBP3 (9q32)PTBP3 (9q32) / ASTN2 (9q33.1)PTBP3 (9q32) / SVEP1 (9q31.3)
SUSD1 (9q31.3) / PTBP3 (9q32)SUSD1 9q31.3 / PTBP3 9q32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTBP3   10253
Cards
Entrez_Gene (NCBI)PTBP3  9991  polypyrimidine tract binding protein 3
AliasesROD1
GeneCards (Weizmann)PTBP3
Ensembl hg19 (Hinxton)ENSG00000119314 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119314 [Gene_View]  chr9:112217715-112333664 [Contig_View]  PTBP3 [Vega]
ICGC DataPortalENSG00000119314
TCGA cBioPortalPTBP3
AceView (NCBI)PTBP3
Genatlas (Paris)PTBP3
WikiGenes9991
SOURCE (Princeton)PTBP3
Genetics Home Reference (NIH)PTBP3
Genomic and cartography
GoldenPath hg38 (UCSC)PTBP3  -     chr9:112217715-112333664 -  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTBP3  -     9q32   [Description]    (hg19-Feb_2009)
EnsemblPTBP3 - 9q32 [CytoView hg19]  PTBP3 - 9q32 [CytoView hg38]
Mapping of homologs : NCBIPTBP3 [Mapview hg19]  PTBP3 [Mapview hg38]
OMIM607527   
Gene and transcription
Genbank (Entrez)AB023967 AK001685 AK302558 AL710523 BC039896
RefSeq transcript (Entrez)NM_001163788 NM_001163790 NM_001244896 NM_001244897 NM_001244898 NM_005156
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PTBP3
Cluster EST : UnigeneHs.269988 [ NCBI ]
CGAP (NCI)Hs.269988
Alternative Splicing GalleryENSG00000119314
Gene ExpressionPTBP3 [ NCBI-GEO ]   PTBP3 [ EBI - ARRAY_EXPRESS ]   PTBP3 [ SEEK ]   PTBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)PTBP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9991
GTEX Portal (Tissue expression)PTBP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95758   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95758  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95758
Splice isoforms : SwissVarO95758
PhosPhoSitePlusO95758
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)HnRNP-L/PTB    Nucleotide-bd_a/b_plait    PTBP3_RRM4    ROD1_RRM1    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)PTBP3
DMDM Disease mutations9991
Blocks (Seattle)PTBP3
SuperfamilyO95758
Human Protein AtlasENSG00000119314
Peptide AtlasO95758
HPRD09603
IPIIPI00470879   IPI00384710   IPI00915299   IPI00915400   IPI00915287   IPI00159072   IPI00640632   
Protein Interaction databases
DIP (DOE-UCLA)O95758
IntAct (EBI)O95758
FunCoupENSG00000119314
BioGRIDPTBP3
STRING (EMBL)PTBP3
ZODIACPTBP3
Ontologies - Pathways
QuickGOO95758
Ontology : AmiGORNA binding  nucleus  mRNA processing  RNA splicing  anatomical structure morphogenesis  negative regulation of RNA splicing  erythrocyte maturation  regulation of cell differentiation  
Ontology : EGO-EBIRNA binding  nucleus  mRNA processing  RNA splicing  anatomical structure morphogenesis  negative regulation of RNA splicing  erythrocyte maturation  regulation of cell differentiation  
NDEx NetworkPTBP3
Atlas of Cancer Signalling NetworkPTBP3
Wikipedia pathwaysPTBP3
Orthology - Evolution
OrthoDB9991
GeneTree (enSembl)ENSG00000119314
Phylogenetic Trees/Animal Genes : TreeFamPTBP3
HOVERGENO95758
HOGENOMO95758
Homologs : HomoloGenePTBP3
Homology/Alignments : Family Browser (UCSC)PTBP3
Gene fusions - Rearrangements
Fusion : MitelmanPTBP3/ASTN2 [9q32/9q33.1]  
Fusion : MitelmanPTBP3/SVEP1 [9q32/9q31.3]  [t(9;9)(q31;q32)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTBP3
dbVarPTBP3
ClinVarPTBP3
1000_GenomesPTBP3 
Exome Variant ServerPTBP3
ExAC (Exome Aggregation Consortium)PTBP3 (select the gene name)
Genetic variants : HAPMAP9991
Genomic Variants (DGV)PTBP3 [DGVbeta]
DECIPHERPTBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPTBP3 
Mutations
ICGC Data PortalPTBP3 
TCGA Data PortalPTBP3 
Broad Tumor PortalPTBP3
OASIS PortalPTBP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTBP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTBP3
DgiDB (Drug Gene Interaction Database)PTBP3
DoCM (Curated mutations)PTBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTBP3 (select a term)
intoGenPTBP3
Cancer3DPTBP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607527   
Orphanet
MedgenPTBP3
Genetic Testing Registry PTBP3
NextProtO95758 [Medical]
TSGene9991
GENETestsPTBP3
Target ValidationPTBP3
Huge Navigator PTBP3 [HugePedia]
snp3D : Map Gene to Disease9991
BioCentury BCIQPTBP3
ClinGenPTBP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9991
Chemical/Pharm GKB GenePA34625
Clinical trialPTBP3
Miscellaneous
canSAR (ICR)PTBP3 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTBP3
EVEXPTBP3
GoPubMedPTBP3
iHOPPTBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:51:38 CEST 2017

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