Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PTCHD1-AS (PTCHD1 antisense RNA (head to head))

Identity

Alias_symbol (synonym)PTCHD1AS1
PTCHD1AS2
DDX53-AS1
Other alias
HGNC (Hugo) PTCHD1-AS
LocusID (NCBI) 100873065
Atlas_Id 72369
Location Xp22.11  [Link to chromosome band Xp22]
Location_base_pair Starts at 22277914 and ends at 23311263 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTCHD1-AS   37703
Cards
Entrez_Gene (NCBI)PTCHD1-AS  100873065  PTCHD1 antisense RNA (head to head)
AliasesDDX53-AS1; PTCHD1AS1; PTCHD1AS2
GeneCards (Weizmann)PTCHD1-AS
Ensembl hg19 (Hinxton)ENSG00000233067 [Gene_View]  chrX:22277914-23311263 [Contig_View]  PTCHD1-AS [Vega]
Ensembl hg38 (Hinxton)ENSG00000233067 [Gene_View]  chrX:22277914-23311263 [Contig_View]  PTCHD1-AS [Vega]
ICGC DataPortalENSG00000233067
TCGA cBioPortalPTCHD1-AS
AceView (NCBI)PTCHD1-AS
Genatlas (Paris)PTCHD1-AS
WikiGenes100873065
SOURCE (Princeton)PTCHD1-AS
Genetics Home Reference (NIH)PTCHD1-AS
Genomic and cartography
GoldenPath hg19 (UCSC)PTCHD1-AS  -     chrX:22277914-23311263 -  Xp22.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PTCHD1-AS  -     Xp22.11   [Description]    (hg38-Dec_2013)
EnsemblPTCHD1-AS - Xp22.11 [CytoView hg19]  PTCHD1-AS - Xp22.11 [CytoView hg38]
Mapping of homologs : NCBIPTCHD1-AS [Mapview hg19]  PTCHD1-AS [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX115199 DA355362 HG512460 HG512461
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)PTCHD1-AS
Cluster EST : UnigeneHs.742479 [ NCBI ]
CGAP (NCI)Hs.742479
Alternative Splicing GalleryENSG00000233067
Gene ExpressionPTCHD1-AS [ NCBI-GEO ]   PTCHD1-AS [ EBI - ARRAY_EXPRESS ]   PTCHD1-AS [ SEEK ]   PTCHD1-AS [ MEM ]
Gene Expression Viewer (FireBrowse)PTCHD1-AS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100873065
GTEX Portal (Tissue expression)PTCHD1-AS
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PTCHD1-AS
DMDM Disease mutations100873065
Blocks (Seattle)PTCHD1-AS
Human Protein AtlasENSG00000233067
Protein Interaction databases
FunCoupENSG00000233067
BioGRIDPTCHD1-AS
STRING (EMBL)PTCHD1-AS
ZODIACPTCHD1-AS
Ontologies - Pathways
Huge Navigator PTCHD1-AS [HugePedia]
snp3D : Map Gene to Disease100873065
BioCentury BCIQPTCHD1-AS
ClinGenPTCHD1-AS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100873065
Clinical trialPTCHD1-AS
Miscellaneous
canSAR (ICR)PTCHD1-AS (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTCHD1-AS
EVEXPTCHD1-AS
GoPubMedPTCHD1-AS
iHOPPTCHD1-AS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:08 CET 2017

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