Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PTCHD3 (patched domain containing 3)

Identity

Alias_symbol (synonym)FLJ44037
PTR
Other alias
HGNC (Hugo) PTCHD3
LocusID (NCBI) 374308
Atlas_Id 72371
Location 10p12.1  [Link to chromosome band 10p12]
Location_base_pair Starts at 27398188 and ends at 27414368 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTCHD3   24776
Cards
Entrez_Gene (NCBI)PTCHD3  374308  patched domain containing 3
AliasesPTR
GeneCards (Weizmann)PTCHD3
Ensembl hg19 (Hinxton)ENSG00000182077 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182077 [Gene_View]  chr10:27398188-27414368 [Contig_View]  PTCHD3 [Vega]
ICGC DataPortalENSG00000182077
TCGA cBioPortalPTCHD3
AceView (NCBI)PTCHD3
Genatlas (Paris)PTCHD3
WikiGenes374308
SOURCE (Princeton)PTCHD3
Genetics Home Reference (NIH)PTCHD3
Genomic and cartography
GoldenPath hg38 (UCSC)PTCHD3  -     chr10:27398188-27414368 -  10p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTCHD3  -     10p12.1   [Description]    (hg19-Feb_2009)
EnsemblPTCHD3 - 10p12.1 [CytoView hg19]  PTCHD3 - 10p12.1 [CytoView hg38]
Mapping of homologs : NCBIPTCHD3 [Mapview hg19]  PTCHD3 [Mapview hg38]
OMIM611791   
Gene and transcription
Genbank (Entrez)AK126025 BC107139 DB509520 JF332167
RefSeq transcript (Entrez)NM_001034842
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PTCHD3
Cluster EST : UnigeneHs.631832 [ NCBI ]
CGAP (NCI)Hs.631832
Alternative Splicing GalleryENSG00000182077
Gene ExpressionPTCHD3 [ NCBI-GEO ]   PTCHD3 [ EBI - ARRAY_EXPRESS ]   PTCHD3 [ SEEK ]   PTCHD3 [ MEM ]
Gene Expression Viewer (FireBrowse)PTCHD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374308
GTEX Portal (Tissue expression)PTCHD3
Human Protein AtlasENSG00000182077-PTCHD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KNS1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KNS1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KNS1
Splice isoforms : SwissVarQ3KNS1
PhosPhoSitePlusQ3KNS1
Domaine pattern : Prosite (Expaxy)SSD (PS50156)   
Domains : Interpro (EBI)Ptc/Disp    SSD   
Domain families : Pfam (Sanger)Patched (PF02460)   
Domain families : Pfam (NCBI)pfam02460   
Conserved Domain (NCBI)PTCHD3
DMDM Disease mutations374308
Blocks (Seattle)PTCHD3
SuperfamilyQ3KNS1
Human Protein Atlas [tissue]ENSG00000182077-PTCHD3 [tissue]
Peptide AtlasQ3KNS1
IPIIPI00418990   
Protein Interaction databases
DIP (DOE-UCLA)Q3KNS1
IntAct (EBI)Q3KNS1
FunCoupENSG00000182077
BioGRIDPTCHD3
STRING (EMBL)PTCHD3
ZODIACPTCHD3
Ontologies - Pathways
QuickGOQ3KNS1
Ontology : AmiGOmolecular_function  cellular_component  spermatid development  integral component of membrane  sperm midpiece  
Ontology : EGO-EBImolecular_function  cellular_component  spermatid development  integral component of membrane  sperm midpiece  
NDEx NetworkPTCHD3
Atlas of Cancer Signalling NetworkPTCHD3
Wikipedia pathwaysPTCHD3
Orthology - Evolution
OrthoDB374308
GeneTree (enSembl)ENSG00000182077
Phylogenetic Trees/Animal Genes : TreeFamPTCHD3
HOVERGENQ3KNS1
HOGENOMQ3KNS1
Homologs : HomoloGenePTCHD3
Homology/Alignments : Family Browser (UCSC)PTCHD3
Gene fusions - Rearrangements
Tumor Fusion PortalPTCHD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTCHD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTCHD3
dbVarPTCHD3
ClinVarPTCHD3
1000_GenomesPTCHD3 
Exome Variant ServerPTCHD3
ExAC (Exome Aggregation Consortium)ENSG00000182077
GNOMAD BrowserENSG00000182077
Genetic variants : HAPMAP374308
Genomic Variants (DGV)PTCHD3 [DGVbeta]
DECIPHERPTCHD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPTCHD3 
Mutations
ICGC Data PortalPTCHD3 
TCGA Data PortalPTCHD3 
Broad Tumor PortalPTCHD3
OASIS PortalPTCHD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTCHD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTCHD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTCHD3
DgiDB (Drug Gene Interaction Database)PTCHD3
DoCM (Curated mutations)PTCHD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTCHD3 (select a term)
intoGenPTCHD3
Cancer3DPTCHD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611791   
Orphanet
DisGeNETPTCHD3
MedgenPTCHD3
Genetic Testing Registry PTCHD3
NextProtQ3KNS1 [Medical]
TSGene374308
GENETestsPTCHD3
Target ValidationPTCHD3
Huge Navigator PTCHD3 [HugePedia]
snp3D : Map Gene to Disease374308
BioCentury BCIQPTCHD3
ClinGenPTCHD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374308
Chemical/Pharm GKB GenePA142671117
Clinical trialPTCHD3
Miscellaneous
canSAR (ICR)PTCHD3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTCHD3
EVEXPTCHD3
GoPubMedPTCHD3
iHOPPTCHD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:22:26 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.