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PTENP1 (phosphatase and tensin homolog pseudogene 1)

Identity

Alias_namesphosphatase and tensin homolog pseudogene 1 (functional)
Alias_symbol (synonym)PTEN2
psiPTEN
PTH2
PTEN-rs
PTENpg1
Other alias
HGNC (Hugo) PTENP1
LocusID (NCBI) 11191
Atlas_Id 41894
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 33673504 and ends at 33677420 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTENP1   9589
Cards
Entrez_Gene (NCBI)PTENP1  11191  phosphatase and tensin homolog pseudogene 1
AliasesPTEN-rs; PTEN2; PTENpg1; PTH2; 
psiPTEN
GeneCards (Weizmann)PTENP1
Ensembl hg19 (Hinxton)ENSG00000237984 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237984 [Gene_View]  chr9:33673504-33677420 [Contig_View]  PTENP1 [Vega]
ICGC DataPortalENSG00000237984
TCGA cBioPortalPTENP1
AceView (NCBI)PTENP1
Genatlas (Paris)PTENP1
WikiGenes11191
SOURCE (Princeton)PTENP1
Genetics Home Reference (NIH)PTENP1
Genomic and cartography
GoldenPath hg38 (UCSC)PTENP1  -     chr9:33673504-33677420 -  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTENP1  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblPTENP1 - 9p13.3 [CytoView hg19]  PTENP1 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIPTENP1 [Mapview hg19]  PTENP1 [Mapview hg38]
OMIM613531   
Gene and transcription
Genbank (Entrez)AF017999 AF019083 AF023139 BC038293 BY797336
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PTENP1
Cluster EST : UnigeneHs.493716 [ NCBI ]
CGAP (NCI)Hs.493716
Alternative Splicing GalleryENSG00000237984
Gene ExpressionPTENP1 [ NCBI-GEO ]   PTENP1 [ EBI - ARRAY_EXPRESS ]   PTENP1 [ SEEK ]   PTENP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PTENP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)11191
GTEX Portal (Tissue expression)PTENP1
Human Protein AtlasENSG00000237984-PTENP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PTENP1
DMDM Disease mutations11191
Blocks (Seattle)PTENP1
Human Protein Atlas [tissue]ENSG00000237984-PTENP1 [tissue]
IPIIPI00889751   
Protein Interaction databases
FunCoupENSG00000237984
BioGRIDPTENP1
STRING (EMBL)PTENP1
ZODIACPTENP1
Ontologies - Pathways
Huge Navigator PTENP1 [HugePedia]
snp3D : Map Gene to Disease11191
BioCentury BCIQPTENP1
ClinGenPTENP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11191
Chemical/Pharm GKB GenePA33943
Clinical trialPTENP1
Miscellaneous
canSAR (ICR)PTENP1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTENP1
EVEXPTENP1
GoPubMedPTENP1
iHOPPTENP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:07:11 CET 2017

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