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PTENP1 (phosphatase and tensin homolog pseudogene 1)

Identity

Other namesPTEN-rs
PTEN2
PTH2
psiPTEN
HGNC (Hugo) PTENP1
LocusID (NCBI) 11191
Location 9p13.3
Location_base_pair Starts at 33673502 and ends at 33677418 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PTENP1   9589
Entrez_Gene (NCBI)PTENP1  11191  phosphatase and tensin homolog pseudogene 1
Cards
GeneCards (Weizmann)PTENP1
Ensembl (Hinxton) [Gene_View]  chr9:33673502-33677418 [Contig_View]  PTENP1 [Vega]
AceView (NCBI)PTENP1
Genatlas (Paris)PTENP1
SOURCE (Stanford)
Genomic and cartography
GoldenPath (UCSC)PTENP1  -  9p13.3   chr9:33673502-33677418 -  9p13.3   [Description]    (hg19-Feb_2009)
EnsemblPTENP1 - 9p13.3 [CytoView]
Mapping of homologs : NCBIPTENP1 [Mapview]
OMIM613531   
Gene and transcription
Genbank (Entrez)AF017999 AF019083 AF023139 BC038293 BY797336
RefSeq transcript (SRS)
RefSeq transcript (Entrez)
RefSeq genomic (SRS)AC_000141 NC_000009 NC_018920 NG_001337 NT_008413 NW_001839149 NW_004078038
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_001337 NT_008413 NW_001839149 NW_004078038
Consensus coding sequences : CCDS (NCBI)PTENP1
Cluster EST : UnigeneHs.493716 [ SRS ] Hs.493716 [ NCBI ]
CGAP (NCI)Hs.493716
Alternative Splicing : Fast-db (Paris)GSHG0030758
Gene ExpressionPTENP1 [ NCBI-GEO ]   PTENP1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM11191
IPIIPI00889751   
Protein Interaction databases
REACTOMEPTENP1
Protein Interaction Database11191
BioGRIDPTENP1
IntegromeDBPTENP1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PTENP1
SNP (GeneSNP Utah)PTENP1
SNP : HGBasePTENP1
Genetic variants : HAPMAPPTENP1
Mutations and Diseases : HGMDPTENP1
OMIM613531   
GENETests613531   
Disease Genetic AssociationPTENP1
Huge Navigator PTENP1 [HugePedia]  PTENP1 [HugeCancerGEM]
Genomic VariantsPTENP1  PTENP1 [DGVbeta]
snp3D : Map Gene to Disease11191
General knowledge
Homologs : HomoloGenePTENP1
Homology/Alignments : Family Browser (UCSC)PTENP1
Phylogenetic Trees/Animal Genes : TreeFamPTENP1
Chemical/Protein Interactions : CTD11191
Chemical/Pharm GKB GenePA33943
Clinical trialPTENP1
Ontology : AmiGO
Ontology : EGO-EBI
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
PubGenePTENP1
iHOPPTENP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:38:23 CEST 2013
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