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PTER (phosphotriesterase related)

Identity

Other aliasHPHRP
RPR-1
HGNC (Hugo) PTER
LocusID (NCBI) 9317
Atlas_Id 72375
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 16436943 and ends at 16513745 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TTC14 (3q26.33) / PTER (10p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTER   9590
Cards
Entrez_Gene (NCBI)PTER  9317  phosphotriesterase related
AliasesHPHRP; RPR-1
GeneCards (Weizmann)PTER
Ensembl hg19 (Hinxton)ENSG00000165983 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165983 [Gene_View]  chr10:16436943-16513745 [Contig_View]  PTER [Vega]
ICGC DataPortalENSG00000165983
TCGA cBioPortalPTER
AceView (NCBI)PTER
Genatlas (Paris)PTER
WikiGenes9317
SOURCE (Princeton)PTER
Genetics Home Reference (NIH)PTER
Genomic and cartography
GoldenPath hg38 (UCSC)PTER  -     chr10:16436943-16513745 +  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTER  -     10p13   [Description]    (hg19-Feb_2009)
EnsemblPTER - 10p13 [CytoView hg19]  PTER - 10p13 [CytoView hg38]
Mapping of homologs : NCBIPTER [Mapview hg19]  PTER [Mapview hg38]
OMIM604446   
Gene and transcription
Genbank (Entrez)AF212237 AK095486 AK314910 AL119009 AW451393
RefSeq transcript (Entrez)NM_001001484 NM_001261836 NM_001261837 NM_001261838 NM_030664
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PTER
Cluster EST : UnigeneHs.745101 [ NCBI ]
CGAP (NCI)Hs.745101
Alternative Splicing GalleryENSG00000165983
Gene ExpressionPTER [ NCBI-GEO ]   PTER [ EBI - ARRAY_EXPRESS ]   PTER [ SEEK ]   PTER [ MEM ]
Gene Expression Viewer (FireBrowse)PTER [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9317
GTEX Portal (Tissue expression)PTER
Human Protein AtlasENSG00000165983-PTER [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BW5
Splice isoforms : SwissVarQ96BW5
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
PhosPhoSitePlusQ96BW5
Domaine pattern : Prosite (Expaxy)PHOSPHOTRIESTERASE_1 (PS01322)    PHOSPHOTRIESTERASE_2 (PS51347)   
Domains : Interpro (EBI)AryldialkylPase_Zn-BS    Metal_Hydrolase    Phosphotriesterase   
Domain families : Pfam (Sanger)PTE (PF02126)   
Domain families : Pfam (NCBI)pfam02126   
Conserved Domain (NCBI)PTER
DMDM Disease mutations9317
Blocks (Seattle)PTER
SuperfamilyQ96BW5
Human Protein Atlas [tissue]ENSG00000165983-PTER [tissue]
Peptide AtlasQ96BW5
HPRD16061
IPIIPI00100933   IPI00903152   
Protein Interaction databases
DIP (DOE-UCLA)Q96BW5
IntAct (EBI)Q96BW5
FunCoupENSG00000165983
BioGRIDPTER
STRING (EMBL)PTER
ZODIACPTER
Ontologies - Pathways
QuickGOQ96BW5
Ontology : AmiGOmolecular_function  zinc ion binding  catabolic process  hydrolase activity, acting on ester bonds  epithelial cell differentiation  extracellular exosome  
Ontology : EGO-EBImolecular_function  zinc ion binding  catabolic process  hydrolase activity, acting on ester bonds  epithelial cell differentiation  extracellular exosome  
NDEx NetworkPTER
Atlas of Cancer Signalling NetworkPTER
Wikipedia pathwaysPTER
Orthology - Evolution
OrthoDB9317
GeneTree (enSembl)ENSG00000165983
Phylogenetic Trees/Animal Genes : TreeFamPTER
HOVERGENQ96BW5
HOGENOMQ96BW5
Homologs : HomoloGenePTER
Homology/Alignments : Family Browser (UCSC)PTER
Gene fusions - Rearrangements
Tumor Fusion PortalPTER
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTER [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTER
dbVarPTER
ClinVarPTER
1000_GenomesPTER 
Exome Variant ServerPTER
ExAC (Exome Aggregation Consortium)ENSG00000165983
GNOMAD BrowserENSG00000165983
Genetic variants : HAPMAP9317
Genomic Variants (DGV)PTER [DGVbeta]
DECIPHERPTER [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPTER 
Mutations
ICGC Data PortalPTER 
TCGA Data PortalPTER 
Broad Tumor PortalPTER
OASIS PortalPTER [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTER  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTER
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTER
DgiDB (Drug Gene Interaction Database)PTER
DoCM (Curated mutations)PTER (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTER (select a term)
intoGenPTER
Cancer3DPTER(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604446   
Orphanet
DisGeNETPTER
MedgenPTER
Genetic Testing Registry PTER
NextProtQ96BW5 [Medical]
TSGene9317
GENETestsPTER
Target ValidationPTER
Huge Navigator PTER [HugePedia]
snp3D : Map Gene to Disease9317
BioCentury BCIQPTER
ClinGenPTER
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9317
Chemical/Pharm GKB GenePA33944
Clinical trialPTER
Miscellaneous
canSAR (ICR)PTER (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTER
EVEXPTER
GoPubMedPTER
iHOPPTER
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:08:49 CET 2017

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