Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PTGDR (prostaglandin D2 receptor)

Identity

Alias_symbol (synonym)DP
DP1
PTGDR1
Other aliasAS1
ASRT1
HGNC (Hugo) PTGDR
LocusID (NCBI) 5729
Atlas_Id 54851
Location 14q22.1  [Link to chromosome band 14q22]
Location_base_pair Starts at 52267713 and ends at 52276724 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTGDR   9591
Cards
Entrez_Gene (NCBI)PTGDR  5729  prostaglandin D2 receptor
AliasesAS1; ASRT1; DP; DP1; 
PTGDR1
GeneCards (Weizmann)PTGDR
Ensembl hg19 (Hinxton)ENSG00000168229 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168229 [Gene_View]  chr14:52267713-52276724 [Contig_View]  PTGDR [Vega]
ICGC DataPortalENSG00000168229
TCGA cBioPortalPTGDR
AceView (NCBI)PTGDR
Genatlas (Paris)PTGDR
WikiGenes5729
SOURCE (Princeton)PTGDR
Genetics Home Reference (NIH)PTGDR
Genomic and cartography
GoldenPath hg38 (UCSC)PTGDR  -     chr14:52267713-52276724 +  14q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTGDR  -     14q22.1   [Description]    (hg19-Feb_2009)
EnsemblPTGDR - 14q22.1 [CytoView hg19]  PTGDR - 14q22.1 [CytoView hg38]
Mapping of homologs : NCBIPTGDR [Mapview hg19]  PTGDR [Mapview hg38]
OMIM604687   607277   
Gene and transcription
Genbank (Entrez)AK026202 BC040968 CD013871 EF577397 U31099
RefSeq transcript (Entrez)NM_000953 NM_001281469
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PTGDR
Cluster EST : UnigeneHs.306831 [ NCBI ]
CGAP (NCI)Hs.306831
Alternative Splicing GalleryENSG00000168229
Gene ExpressionPTGDR [ NCBI-GEO ]   PTGDR [ EBI - ARRAY_EXPRESS ]   PTGDR [ SEEK ]   PTGDR [ MEM ]
Gene Expression Viewer (FireBrowse)PTGDR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5729
GTEX Portal (Tissue expression)PTGDR
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13258   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13258  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13258
Splice isoforms : SwissVarQ13258
PhosPhoSitePlusQ13258
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Pglndn_D_rcpt    Prostanoid_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)PTGDR
DMDM Disease mutations5729
Blocks (Seattle)PTGDR
SuperfamilyQ13258
Human Protein AtlasENSG00000168229
Peptide AtlasQ13258
HPRD05254
IPIIPI00012371   IPI01024815   
Protein Interaction databases
DIP (DOE-UCLA)Q13258
IntAct (EBI)Q13258
FunCoupENSG00000168229
BioGRIDPTGDR
STRING (EMBL)PTGDR
ZODIACPTGDR
Ontologies - Pathways
QuickGOQ13258
Ontology : AmiGOprostaglandin J receptor activity  prostaglandin D receptor activity  prostaglandin D receptor activity  prostaglandin E receptor activity  protein binding  plasma membrane  plasma membrane  inflammatory response  G-protein coupled receptor signaling pathway  integral component of membrane  male sex determination  sleep  adenosine metabolic process  cellular response to prostaglandin E stimulus  cellular response to prostaglandin D stimulus  
Ontology : EGO-EBIprostaglandin J receptor activity  prostaglandin D receptor activity  prostaglandin D receptor activity  prostaglandin E receptor activity  protein binding  plasma membrane  plasma membrane  inflammatory response  G-protein coupled receptor signaling pathway  integral component of membrane  male sex determination  sleep  adenosine metabolic process  cellular response to prostaglandin E stimulus  cellular response to prostaglandin D stimulus  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkPTGDR
Atlas of Cancer Signalling NetworkPTGDR
Wikipedia pathwaysPTGDR
Orthology - Evolution
OrthoDB5729
GeneTree (enSembl)ENSG00000168229
Phylogenetic Trees/Animal Genes : TreeFamPTGDR
HOVERGENQ13258
HOGENOMQ13258
Homologs : HomoloGenePTGDR
Homology/Alignments : Family Browser (UCSC)PTGDR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTGDR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTGDR
dbVarPTGDR
ClinVarPTGDR
1000_GenomesPTGDR 
Exome Variant ServerPTGDR
ExAC (Exome Aggregation Consortium)PTGDR (select the gene name)
Genetic variants : HAPMAP5729
Genomic Variants (DGV)PTGDR [DGVbeta]
DECIPHERPTGDR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPTGDR 
Mutations
ICGC Data PortalPTGDR 
TCGA Data PortalPTGDR 
Broad Tumor PortalPTGDR
OASIS PortalPTGDR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTGDR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTGDR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTGDR
DgiDB (Drug Gene Interaction Database)PTGDR
DoCM (Curated mutations)PTGDR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTGDR (select a term)
intoGenPTGDR
Cancer3DPTGDR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604687    607277   
Orphanet
MedgenPTGDR
Genetic Testing Registry PTGDR
NextProtQ13258 [Medical]
TSGene5729
GENETestsPTGDR
Huge Navigator PTGDR [HugePedia]
snp3D : Map Gene to Disease5729
BioCentury BCIQPTGDR
ClinGenPTGDR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5729
Chemical/Pharm GKB GenePA285
Clinical trialPTGDR
Miscellaneous
canSAR (ICR)PTGDR (select the gene name)
Probes
Litterature
PubMed71 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTGDR
EVEXPTGDR
GoPubMedPTGDR
iHOPPTGDR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:33:23 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.