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PTGER1 (prostaglandin E receptor 1)

Identity

Alias_namesprostaglandin E receptor 1 (subtype EP1), 42kD
prostaglandin E receptor 1 (subtype EP1), 42kDa
Alias_symbol (synonym)EP1
Other alias
HGNC (Hugo) PTGER1
LocusID (NCBI) 5731
Atlas_Id 46156
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14472466 and ends at 14475362 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTGER1   9593
Cards
Entrez_Gene (NCBI)PTGER1  5731  prostaglandin E receptor 1
AliasesEP1
GeneCards (Weizmann)PTGER1
Ensembl hg19 (Hinxton)ENSG00000160951 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160951 [Gene_View]  chr19:14472466-14475362 [Contig_View]  PTGER1 [Vega]
ICGC DataPortalENSG00000160951
TCGA cBioPortalPTGER1
AceView (NCBI)PTGER1
Genatlas (Paris)PTGER1
WikiGenes5731
SOURCE (Princeton)PTGER1
Genetics Home Reference (NIH)PTGER1
Genomic and cartography
GoldenPath hg38 (UCSC)PTGER1  -     chr19:14472466-14475362 -  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTGER1  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblPTGER1 - 19p13.12 [CytoView hg19]  PTGER1 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBIPTGER1 [Mapview hg19]  PTGER1 [Mapview hg38]
OMIM176802   
Gene and transcription
Genbank (Entrez)AY275470 BC029768 BC039034 BC051286 L22647
RefSeq transcript (Entrez)NM_000955
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PTGER1
Cluster EST : UnigeneHs.159360 [ NCBI ]
CGAP (NCI)Hs.159360
Alternative Splicing GalleryENSG00000160951
Gene ExpressionPTGER1 [ NCBI-GEO ]   PTGER1 [ EBI - ARRAY_EXPRESS ]   PTGER1 [ SEEK ]   PTGER1 [ MEM ]
Gene Expression Viewer (FireBrowse)PTGER1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5731
GTEX Portal (Tissue expression)PTGER1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP34995   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP34995  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP34995
Splice isoforms : SwissVarP34995
PhosPhoSitePlusP34995
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Prostanoid_rcpt    Prostglndn_DP_rcpt    Prostglndn_EP1_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)PTGER1
DMDM Disease mutations5731
Blocks (Seattle)PTGER1
SuperfamilyP34995
Human Protein AtlasENSG00000160951
Peptide AtlasP34995
HPRD08903
IPIIPI00003081   
Protein Interaction databases
DIP (DOE-UCLA)P34995
IntAct (EBI)P34995
FunCoupENSG00000160951
BioGRIDPTGER1
STRING (EMBL)PTGER1
ZODIACPTGER1
Ontologies - Pathways
QuickGOP34995
Ontology : AmiGOprostaglandin E receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  response to lipopolysaccharide  
Ontology : EGO-EBIprostaglandin E receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  response to lipopolysaccharide  
Pathways : BIOCARTAPhospholipase C-epsilon pathway [Genes]    Eicosanoid Metabolism [Genes]   
Pathways : KEGGCalcium signaling pathway    Neuroactive ligand-receptor interaction   
NDEx NetworkPTGER1
Atlas of Cancer Signalling NetworkPTGER1
Wikipedia pathwaysPTGER1
Orthology - Evolution
OrthoDB5731
GeneTree (enSembl)ENSG00000160951
Phylogenetic Trees/Animal Genes : TreeFamPTGER1
HOVERGENP34995
HOGENOMP34995
Homologs : HomoloGenePTGER1
Homology/Alignments : Family Browser (UCSC)PTGER1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTGER1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTGER1
dbVarPTGER1
ClinVarPTGER1
1000_GenomesPTGER1 
Exome Variant ServerPTGER1
ExAC (Exome Aggregation Consortium)PTGER1 (select the gene name)
Genetic variants : HAPMAP5731
Genomic Variants (DGV)PTGER1 [DGVbeta]
DECIPHERPTGER1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPTGER1 
Mutations
ICGC Data PortalPTGER1 
TCGA Data PortalPTGER1 
Broad Tumor PortalPTGER1
OASIS PortalPTGER1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTGER1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTGER1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTGER1
DgiDB (Drug Gene Interaction Database)PTGER1
DoCM (Curated mutations)PTGER1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTGER1 (select a term)
intoGenPTGER1
Cancer3DPTGER1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176802   
Orphanet
MedgenPTGER1
Genetic Testing Registry PTGER1
NextProtP34995 [Medical]
TSGene5731
GENETestsPTGER1
Huge Navigator PTGER1 [HugePedia]
snp3D : Map Gene to Disease5731
BioCentury BCIQPTGER1
ClinGenPTGER1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5731
Chemical/Pharm GKB GenePA286
Clinical trialPTGER1
Miscellaneous
canSAR (ICR)PTGER1 (select the gene name)
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTGER1
EVEXPTGER1
GoPubMedPTGER1
iHOPPTGER1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:33:24 CEST 2017

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